Homology
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Match:
A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)
HSP 1 Score: 69.7 bits (169), Expect = 2.290e-10
Identity = 63/142 (44.37%), Postives = 72/142 (50.70%), Query Frame = -1
Query: 88 GLDSSTDKEVMAILSSPGRQK--LVKPQPRPGALATAVTCLRPPLPSESIVNGKVLPGPAAVADSSGSDYSSEAA---------VAVPVGDG------------GEASSS---TEVLPKSTNASWDPQVQSSSSAFSVPAGR 435
G D+S DKEVMAILSSP +QK +VKPQPRPG +P+ NG P A A + G D A V VG G G A+ S T LPK ++ASWDP VQSSSSAFSVPAGR
Sbjct: 11 GGDASADKEVMAILSSPVQQKKFVVKPQPRPGGA----------IPASPAANGNAAFVPPASATTLGGDRRDATAGLPRVRCGAVEAVVGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSVPAGR 142
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Match:
D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)
HSP 1 Score: 68.9 bits (167), Expect = 4.400e-10
Identity = 62/151 (41.06%), Postives = 72/151 (47.68%), Query Frame = -1
Query: 73 GLDSSTDKEVMAILSSPGRQK--LVKPQPRPGALATAVTCLRPPLPSESIVNGKVLPGPAAVADSSGSDYSSEAAVAVPVGDGGEASSSTEV----------------------------LPKSTNASWDPQVQSSSSAFSVPAGRGAGRG 435
G D+S DKEVMAILSSP +QK +VKPQPRPG P+ NG P + + GSD A A+P GG + V LPK ++ASWDP VQSSSSAFSVPAGRG G G
Sbjct: 11 GGDASADKEVMAILSSPAQQKKFVVKPQPRPGGA----------FPASPAANGNAAFVPPSSVAALGSDLRDTTA-ALP---GGRCGAVEAVVGGGXXXXXXXXXXXXXXXXXXXXXXXGLPKPSSASWDPHVQSSSSAFSVPAGRGGGGG 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.29e-10 / Id = 44.37 Expect = 4.40e-10 / Id = 41.06 Sequence A0A6H5KNA0_9PHAE D8LN70_ECTSI
Match Name E-value Identity Description
A0A6H5KNA0_9PHAE 2.290e-10 44.37 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LN70_ECTSI 4.400e-10 41.06 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 612 Cds size 309 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817355.32109-CDS-P-canaliculata_contig9958:6490..6799 1622817355.32109-CDS-P-canaliculata_contig9958:6490..6799 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 6491..6799 + 1693495243.43255-CDS-P-canaliculata_contig9958:6490..6799 1693495243.43255-CDS-P-canaliculata_contig9958:6490..6799 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9958 6491..6799 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817355.332385-UTR-P-canaliculata_contig9958:6799..7102 1622817355.332385-UTR-P-canaliculata_contig9958:6799..7102 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9958 6800..7102 + 1693495243.4513695-UTR-P-canaliculata_contig9958:6799..7102 1693495243.4513695-UTR-P-canaliculata_contig9958:6799..7102 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9958 6800..7102 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9958.24072.1
>prot_P-canaliculata_contig9958.24072.1 ID=prot_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
ASESQPSQTRTPPPSNTLGSTGLVPASSAPSRRHRKRAARALNLRIPRSI back to top mRNA from alignment at P-canaliculata_contig9958:6491..7102+
Legend: CDS polypeptide UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9958.24072.1 ID=mRNA_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig9958:6491..7102+ (Pelvetia canaliculata dioecious)GCCTCCGAGAGTCAGCCCTCCCAGACCCGCACCCCCCCTCCCTCCAACAC
CCTGGGAAGCACCGGGCTTGTCCCCGCGTCCAGCGCCCCTTCCCGCCGGC
ACCGAAAACGCGCTGCTCGAGCTCTGAACCTGCGGATCCCAAGAAGCATT
CGTCGATTTCGGCAGCACCTCTGTACTACTACTGGCTTCGCCTCCATCGC
CTACCGGTACTGCCACTGCCGCCTCGCTGGAATAGTCGCTTCCACTGGAG
TCAGCGACTGCTGCAGGGCCTGGCAGCACCTTTCCATTGACGATGCTCTC
GGAAGGTAG CGGCGGCCTGAGACAAGTCACCGCGGTCGCGAGGGCCCCCG
GTCTGGGCTGGGGCTTGACCAGCTTCTGCCGGCCCGGGCTAGAGAGAATC
GCCATCACCTCCTTGTCCGTGGACGAGTCCAAGCCCGGGTGCATGGCTGC
GGCGGCCGTCCAAAACGCTGCTTACAAGCGCCTCGCGTGTGGATCTGTCG
GCGCCGACTAAAGCCCTGCCGACTATGAATTTGAGAGGACCGAGTAGGGA
CAAGTACTTTTTGCGTCTGCTTGGCCGGCCCGATGTAAAGAAAGTCTCCA
GCTCCTCCAGCT back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9958:6491..7102+
>mRNA_P-canaliculata_contig9958.24072.1 ID=mRNA_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig9958:6491..7102+ (Pelvetia canaliculata dioecious) back to top