mRNA_P-canaliculata_contig9958.24072.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.290e-10 Identity = 63/142 (44.37%), Postives = 72/142 (50.70%), Query Frame = -1 Query: 88 GLDSSTDKEVMAILSSPGRQK--LVKPQPRPGALATAVTCLRPPLPSESIVNGKVLPGPAAVADSSGSDYSSEAA---------VAVPVGDG------------GEASSS---TEVLPKSTNASWDPQVQSSSSAFSVPAGR 435
G D+S DKEVMAILSSP +QK +VKPQPRPG +P+ NG P A A + G D A V VG G G A+ S T LPK ++ASWDP VQSSSSAFSVPAGR
Sbjct: 11 GGDASADKEVMAILSSPVQQKKFVVKPQPRPGGA----------IPASPAANGNAAFVPPASATTLGGDRRDATAGLPRVRCGAVEAVVGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSVPAGR 142
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 4.400e-10 Identity = 62/151 (41.06%), Postives = 72/151 (47.68%), Query Frame = -1 Query: 73 GLDSSTDKEVMAILSSPGRQK--LVKPQPRPGALATAVTCLRPPLPSESIVNGKVLPGPAAVADSSGSDYSSEAAVAVPVGDGGEASSSTEV----------------------------LPKSTNASWDPQVQSSSSAFSVPAGRGAGRG 435
G D+S DKEVMAILSSP +QK +VKPQPRPG P+ NG P + + GSD A A+P GG + V LPK ++ASWDP VQSSSSAFSVPAGRG G G
Sbjct: 11 GGDASADKEVMAILSSPAQQKKFVVKPQPRPGGA----------FPASPAANGNAAFVPPSSVAALGSDLRDTTA-ALP---GGRCGAVEAVVGGGXXXXXXXXXXXXXXXXXXXXXXXGLPKPSSASWDPHVQSSSSAFSVPAGRGGGGG 147 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9958.24072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9958.24072.1 >prot_P-canaliculata_contig9958.24072.1 ID=prot_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp ASESQPSQTRTPPPSNTLGSTGLVPASSAPSRRHRKRAARALNLRIPRSIback to top mRNA from alignment at P-canaliculata_contig9958:6491..7102+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9958.24072.1 ID=mRNA_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig9958:6491..7102+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9958:6491..7102+ >mRNA_P-canaliculata_contig9958.24072.1 ID=mRNA_P-canaliculata_contig9958.24072.1|Name=mRNA_P-canaliculata_contig9958.24072.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig9958:6491..7102+ (Pelvetia canaliculata dioecious)back to top |