mRNA_P-canaliculata_contig99302.24045.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99302.24045.1
Unique NamemRNA_P-canaliculata_contig99302.24045.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99302.24045.1 vs. uniprot
Match: A0A518GAF9_9BACT (Phosphocholine transferase AnkX n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518GAF9_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 3.930e-13
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:   10 GCTLVFAAVLILTSTRATAQTQTSESMPRLADLAESQHWDWLDKPLSDDAIQQA-QPDGTSVLHWAVFHRNQAAIEKLIAAGIDVNQTNRYQVSPLSLACELG 315
            G  LV+ ++   ++     ++ +S S   L DLAE Q W  +   L+      A QPDGT+ LHWAVFH +  AI+ L+A   DVN    YQV+PLSLACE G
Sbjct:   12 GYLLVWCSIRPASAPAFQQESGSSVSPATLPDLAEHQRWTDVASQLAQGEPPTATQPDGTTALHWAVFHNHPEAIQLLLATSADVNAETHYQVTPLSLACEFG 114
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BLAST of mRNA_P-canaliculata_contig99302.24045.1 vs. uniprot
Match: UPI001E3405EA (ankyrin repeat domain-containing protein n=2 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E3405EA)

HSP 1 Score: 75.9 bits (185), Expect = 7.410e-13
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   91 PRLADLAESQHWDWLDKPL---SDDAIQQAQPDGTSVLHWAVFHRNQAAIEKLIAAGIDVNQTNRYQVSPLSLACELG 315
            P LADLAE   W  L   L   +D  +QQ  PDGT+ LHWAV+H++Q +I+ LI AG++V+  N+Y V+PL++AC  G
Sbjct:   45 PSLADLAERSEWVNLKLKLRSGADPNVQQ--PDGTTALHWAVYHQDQPSIDALIEAGVEVDVPNKYDVTPLAIACRYG 120
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BLAST of mRNA_P-canaliculata_contig99302.24045.1 vs. uniprot
Match: A0A848WVR8_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A848WVR8_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 1.360e-10
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:   97 LADLAESQHWDWLDKPLSDDAIQQA-QPDGTSVLHWAVFHRNQAAIEKLIAAGIDVNQTNRYQVSPLSLACELGH 318
            L+DLAE+Q+W  ++K L++ A   A QPDGT+ LHWA +H  +  ++ L+ AG   +  NR+  +PLSLAC  G+
Sbjct:   24 LSDLAEAQNWRAVEKALTEKADPNAAQPDGTTALHWAAYHDREQVVKTLLEAGGKPDARNRFDATPLSLACTNGN 98
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BLAST of mRNA_P-canaliculata_contig99302.24045.1 vs. uniprot
Match: UPI001E56697A (ankyrin repeat domain-containing protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E56697A)

HSP 1 Score: 54.7 bits (130), Expect = 1.510e-5
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  166 QAQPDGTSVLHWAVFHRNQAAIEKLIAAGIDVNQTNRYQVSPLSLACELGHEPAA 330
            Q+QPDG + + WA +H     IE+L AAG D++ + +Y VSPLSLA E G+  +A
Sbjct:   72 QSQPDGMTAVLWAAYHDQPQWIERLHAAGADLDVSTQYLVSPLSLASEFGNMESA 126
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BLAST of mRNA_P-canaliculata_contig99302.24045.1 vs. uniprot
Match: A0A2V8FBE4_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8FBE4_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.820e-5
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:  160 IQQAQPDGTSVLHWAVFHRNQAAIEKLIAAGIDVNQTNRYQVSPLSLAC 306
            +     DGTS LHWAV   +  A++ L+ AG   + TNRY V+PLSLAC
Sbjct:  118 VNDTDVDGTSALHWAVHRDDVNAVDLLLGAGAKASATNRYGVTPLSLAC 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99302.24045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A518GAF9_9BACT3.930e-1342.72Phosphocholine transferase AnkX n=1 Tax=Aureliella... [more]
UPI001E3405EA7.410e-1348.72ankyrin repeat domain-containing protein n=2 Tax=R... [more]
A0A848WVR8_9BACT1.360e-1044.00Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
UPI001E56697A1.510e-547.27ankyrin repeat domain-containing protein n=2 Tax=u... [more]
A0A2V8FBE4_9BACT2.820e-548.98Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99302contigP-canaliculata_contig99302:4..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size531
Cds size531
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.5713525-CDS-P-canaliculata_contig99302:3..5341622817353.5713525-CDS-P-canaliculata_contig99302:3..534Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99302 4..534 -
1693495242.3238053-CDS-P-canaliculata_contig99302:3..5341693495242.3238053-CDS-P-canaliculata_contig99302:3..534Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99302 4..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99302.24045.1prot_P-canaliculata_contig99302.24045.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99302 4..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99302.24045.1

>prot_P-canaliculata_contig99302.24045.1 ID=prot_P-canaliculata_contig99302.24045.1|Name=mRNA_P-canaliculata_contig99302.24045.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=177bp
MRFGCTLVFAAVLILTSTRATAQTQTSESMPRLADLAESQHWDWLDKPLS
DDAIQQAQPDGTSVLHWAVFHRNQAAIEKLIAAGIDVNQTNRYQVSPLSL
ACELGHEPAALSLIKAKADVQSQRLGRETPLMFAARNGNAEIVSALIEAG
ANVDAQEVNGQTALIWAAAEGSSKCID
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mRNA from alignment at P-canaliculata_contig99302:4..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99302.24045.1 ID=mRNA_P-canaliculata_contig99302.24045.1|Name=mRNA_P-canaliculata_contig99302.24045.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at P-canaliculata_contig99302:4..534- (Pelvetia canaliculata dioecious)
ATGCGATTTGGTTGTACCTTGGTTTTCGCGGCAGTACTGATACTGACCTC
TACTCGAGCCACCGCACAGACTCAAACCTCTGAATCGATGCCTCGCCTCG
CCGATCTGGCCGAATCTCAACACTGGGATTGGCTGGACAAACCGCTGTCC
GACGATGCGATCCAGCAAGCCCAACCCGATGGCACTAGCGTTTTGCATTG
GGCCGTGTTTCATCGAAACCAAGCGGCGATCGAAAAACTGATCGCTGCTG
GCATCGACGTGAACCAAACCAACCGCTACCAAGTCAGCCCGCTTAGTCTC
GCCTGCGAGCTGGGCCATGAGCCAGCAGCACTGAGTTTGATCAAAGCCAA
AGCGGATGTGCAATCGCAACGACTCGGCCGCGAGACGCCACTAATGTTCG
CCGCGCGAAATGGTAACGCGGAAATCGTCAGTGCTCTGATCGAGGCCGGT
GCAAATGTCGATGCCCAAGAAGTCAATGGACAAACGGCGTTGATCTGGGC
TGCGGCAGAAGGCAGTTCAAAGTGTATTGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig99302:4..534-

>mRNA_P-canaliculata_contig99302.24045.1 ID=mRNA_P-canaliculata_contig99302.24045.1|Name=mRNA_P-canaliculata_contig99302.24045.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at P-canaliculata_contig99302:4..534- (Pelvetia canaliculata dioecious)
ATGCGATTTGGTTGTACCTTGGTTTTCGCGGCAGTACTGATACTGACCTC
TACTCGAGCCACCGCACAGACTCAAACCTCTGAATCGATGCCTCGCCTCG
CCGATCTGGCCGAATCTCAACACTGGGATTGGCTGGACAAACCGCTGTCC
GACGATGCGATCCAGCAAGCCCAACCCGATGGCACTAGCGTTTTGCATTG
GGCCGTGTTTCATCGAAACCAAGCGGCGATCGAAAAACTGATCGCTGCTG
GCATCGACGTGAACCAAACCAACCGCTACCAAGTCAGCCCGCTTAGTCTC
GCCTGCGAGCTGGGCCATGAGCCAGCAGCACTGAGTTTGATCAAAGCCAA
AGCGGATGTGCAATCGCAACGACTCGGCCGCGAGACGCCACTAATGTTCG
CCGCGCGAAATGGTAACGCGGAAATCGTCAGTGCTCTGATCGAGGCCGGT
GCAAATGTCGATGCCCAAGAAGTCAATGGACAAACGGCGTTGATCTGGGC
TGCGGCAGAAGGCAGTTCAAAGTGTATTGATATGCGATTTGGTTGTACCT
TGGTTTTCGCGGCAGTACTGATACTGACCTCTACTCGAGCCACCGCACAG
ACTCAAACCTCTGAATCGATGCCTCGCCTCGCCGATCTGGCCGAATCTCA
ACACTGGGATTGGCTGGACAAACCGCTGTCCGACGATGCGATCCAGCAAG
CCCAACCCGATGGCACTAGCGTTTTGCATTGGGCCGTGTTTCATCGAAAC
CAAGCGGCGATCGAAAAACTGATCGCTGCTGGCATCGACGTGAACCAAAC
CAACCGCTACCAAGTCAGCCCGCTTAGTCTCGCCTGCGAGCTGGGCCATG
AGCCAGCAGCACTGAGTTTGATCAAAGCCAAAGCGGATGTGCAATCGCAA
CGACTCGGCCGCGAGACGCCACTAATGTTCGCCGCGCGAAATGGTAACGC
GGAAATCGTCAGTGCTCTGATCGAGGCCGGTGCAAATGTCGATGCCCAAG
AAGTCAATGGACAAACGGCGTTGATCTGGGCTGCGGCAGAAGGCAGTTCA
AAGTGTATTGAT
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