Homology
BLAST of mRNA_P-canaliculata_contig99183.24034.1 vs. uniprot
Match: A0A5C6B0A3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6B0A3_9BACT) HSP 1 Score: 90.9 bits (224), Expect = 1.900e-19 Identity = 56/173 (32.37%), Postives = 93/173 (53.76%), Query Frame = 1 Query: 70 SGIDYTEDSPTSGRVTAGMFVLGMPILLGFGFLVSTCIAYIARRMGAWVAWPLTAMVFAMLIYLSAVSSSPWNRLADVLNVDLQ-NVRICRLKQMDSFGDGITTLALIDGDDELFDRICLANGLRKTSDLTPSFFNWLYEDKTPFLEPVTVFENDRLTCYNDAANNRLFIYHR 585
S +D++ GR TAG FVLG+P+L+ L + + +ARR +AW ++F L++ + S+P RL L+V++ +V+I RL++ DSF DGITT+ D E + + + L + D+T + + D ++ V + NDRLTCY+D+ L+ R
Sbjct: 2 SSMDFSTALAGDGRKTAGWFVLGLPMLVPIAMLSTMPFSMVARRGRRAIAWLAMCVLFGALMWFAYSQSTPLARLEWALDVEIPTDVKIIRLRETDSFNDGITTVGACIADREFINDLVAHHSL--SEDITGGYISPYLPDANISVDGVG-YRNDRLTCYHDSKTKTLYFVRR 171
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 612 |
| Cds size | 612 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817352.6743445-CDS-P-canaliculata_contig99183:327..939 | 1622817352.6743445-CDS-P-canaliculata_contig99183:327..939 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99183 328..939 - |
| 1693495241.6851287-CDS-P-canaliculata_contig99183:327..939 | 1693495241.6851287-CDS-P-canaliculata_contig99183:327..939 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99183 328..939 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99183.24034.1 >prot_P-canaliculata_contig99183.24034.1 ID=prot_P-canaliculata_contig99183.24034.1|Name=mRNA_P-canaliculata_contig99183.24034.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=204bp
LLRPFSLFATSMICFLVWAWFSTSGIDYTEDSPTSGRVTAGMFVLGMPIL
LGFGFLVSTCIAYIARRMGAWVAWPLTAMVFAMLIYLSAVSSSPWNRLAD
VLNVDLQNVRICRLKQMDSFGDGITTLALIDGDDELFDRICLANGLRKTS
DLTPSFFNWLYEDKTPFLEPVTVFENDRLTCYNDAANNRLFIYHRSRSYP
GED* back to topmRNA from alignment at P-canaliculata_contig99183:328..939- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig99183.24034.1 ID=mRNA_P-canaliculata_contig99183.24034.1|Name=mRNA_P-canaliculata_contig99183.24034.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig99183:328..939- (Pelvetia canaliculata dioecious)
TTACTCAGACCTTTTAGCCTTTTCGCAACTTCTATGATTTGCTTTTTGGT
CTGGGCTTGGTTCTCAACGTCTGGGATTGATTACACTGAAGATTCTCCCA
CTTCGGGCCGGGTAACAGCAGGTATGTTTGTGTTGGGAATGCCGATTCTG
TTGGGCTTTGGCTTTCTTGTATCGACATGCATCGCTTACATAGCACGGCG
AATGGGAGCGTGGGTTGCATGGCCTCTCACTGCAATGGTTTTCGCCATGT
TGATTTATCTATCCGCAGTTAGTTCATCGCCATGGAATCGACTCGCTGAC
GTATTAAATGTAGATTTGCAGAATGTCAGGATCTGCCGACTGAAACAGAT
GGACTCTTTTGGCGATGGAATAACGACGCTCGCACTGATTGACGGTGATG
ACGAACTTTTTGATCGAATCTGTCTCGCGAACGGGCTTCGTAAAACGTCT
GACCTCACACCAAGCTTTTTCAACTGGCTTTACGAGGATAAGACACCGTT
TCTAGAGCCGGTCACCGTGTTTGAAAATGATCGCTTGACATGCTACAACG
ACGCCGCAAATAATAGACTCTTCATATACCACCGTTCTCGATCTTATCCG
GGCGAAGACTGA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig99183:328..939- >mRNA_P-canaliculata_contig99183.24034.1 ID=mRNA_P-canaliculata_contig99183.24034.1|Name=mRNA_P-canaliculata_contig99183.24034.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at P-canaliculata_contig99183:328..939- (Pelvetia canaliculata dioecious)
TTACTCAGACCTTTTAGCCTTTTCGCAACTTCTATGATTTGCTTTTTGGT
CTGGGCTTGGTTCTCAACGTCTGGGATTGATTACACTGAAGATTCTCCCA
CTTCGGGCCGGGTAACAGCAGGTATGTTTGTGTTGGGAATGCCGATTCTG
TTGGGCTTTGGCTTTCTTGTATCGACATGCATCGCTTACATAGCACGGCG
AATGGGAGCGTGGGTTGCATGGCCTCTCACTGCAATGGTTTTCGCCATGT
TGATTTATCTATCCGCAGTTAGTTCATCGCCATGGAATCGACTCGCTGAC
GTATTAAATGTAGATTTGCAGAATGTCAGGATCTGCCGACTGAAACAGAT
GGACTCTTTTGGCGATGGAATAACGACGCTCGCACTGATTGACGGTGATG
ACGAACTTTTTGATCGAATCTGTCTCGCGAACGGGCTTCGTAAAACGTCT
GACCTCACACCAAGCTTTTTCAACTGGCTTTACGAGGATAAGACACCGTT
TCTAGAGCCGGTCACCGTGTTTGAAAATGATCGCTTGACATGCTACAACG
ACGCCGCAAATAATAGACTCTTCATATACCACCGTTCTCGATCTTATCCG
GGCGAAGACTGATTACTCAGACCTTTTAGCCTTTTCGCAACTTCTATGAT
TTGCTTTTTGGTCTGGGCTTGGTTCTCAACGTCTGGGATTGATTACACTG
AAGATTCTCCCACTTCGGGCCGGGTAACAGCAGGTATGTTTGTGTTGGGA
ATGCCGATTCTGTTGGGCTTTGGCTTTCTTGTATCGACATGCATCGCTTA
CATAGCACGGCGAATGGGAGCGTGGGTTGCATGGCCTCTCACTGCAATGG
TTTTCGCCATGTTGATTTATCTATCCGCAGTTAGTTCATCGCCATGGAAT
CGACTCGCTGACGTATTAAATGTAGATTTGCAGAATGTCAGGATCTGCCG
ACTGAAACAGATGGACTCTTTTGGCGATGGAATAACGACGCTCGCACTGA
TTGACGGTGATGACGAACTTTTTGATCGAATCTGTCTCGCGAACGGGCTT
CGTAAAACGTCTGACCTCACACCAAGCTTTTTCAACTGGCTTTACGAGGA
TAAGACACCGTTTCTAGAGCCGGTCACCGTGTTTGAAAATGATCGCTTGA
CATGCTACAACGACGCCGCAAATAATAGACTCTTCATATACCACCGTTCT
CGATCTTATCCGGGCGAAGACTGA back to top
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