Homology
BLAST of mRNA_P-canaliculata_contig98952.24011.1 vs. uniprot
Match:
D8LGS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS5_ECTSI)
HSP 1 Score: 63.9 bits (154), Expect = 8.740e-11
Identity = 36/59 (61.02%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 1 VVATGAEDSTVRLWDLR-----------------ATSSSRVARCLCRCFDGEAVTSVVF 126
+VATGAEDSTVRLWDLR TSS RVA CLCRCF GEAV+SVVF
Sbjct: 37 LVATGAEDSTVRLWDLRDGATARTPGGSGTTSSGTTSSPRVAMCLCRCFGGEAVSSVVF 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98952.24011.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 8.74e-11 / Id = 61.02 Sequence D8LGS5_ECTSI
Match Name E-value Identity Description
D8LGS5_ECTSI 8.740e-11 61.02 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category no signal peptide or anchor Ec32 ortholog description WD40 repeat Ec32 ortholog Ec-07_005190.1 Exons 1 Model size 126 Cds size 126 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817351.0273802-CDS-P-canaliculata_contig98952:602..728 1622817351.0273802-CDS-P-canaliculata_contig98952:602..728 Pelvetia canaliculata dioecious CDS P-canaliculata_contig98952 603..728 - 1693495240.6330802-CDS-P-canaliculata_contig98952:602..728 1693495240.6330802-CDS-P-canaliculata_contig98952:602..728 Pelvetia canaliculata dioecious CDS P-canaliculata_contig98952 603..728 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98952.24011.1
>prot_P-canaliculata_contig98952.24011.1 ID=prot_P-canaliculata_contig98952.24011.1|Name=mRNA_P-canaliculata_contig98952.24011.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=42bp
VVATGAEDSTVRLWDLRATSSSRVARCLCRCFDGEAVTSVVF back to top mRNA from alignment at P-canaliculata_contig98952:603..728-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98952.24011.1 ID=mRNA_P-canaliculata_contig98952.24011.1|Name=mRNA_P-canaliculata_contig98952.24011.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at P-canaliculata_contig98952:603..728- (Pelvetia canaliculata dioecious)GTGGTGGCAACTGGGGCGGAGGACAGCACAGTGCGACTGTGGGACCTCAG
AGCCACCTCCTCGTCCCGGGTTGCGCGCTGCCTTTGCCGCTGCTTCGACG
GAGAGGCCGTCACCAGCGTCGTCTTC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98952:603..728-
>mRNA_P-canaliculata_contig98952.24011.1 ID=mRNA_P-canaliculata_contig98952.24011.1|Name=mRNA_P-canaliculata_contig98952.24011.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at P-canaliculata_contig98952:603..728- (Pelvetia canaliculata dioecious) back to top