mRNA_P-canaliculata_contig98952.24011.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98952.24011.1
Unique NamemRNA_P-canaliculata_contig98952.24011.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98952.24011.1 vs. uniprot
Match: D8LGS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.740e-11
Identity = 36/59 (61.02%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 VVATGAEDSTVRLWDLR-----------------ATSSSRVARCLCRCFDGEAVTSVVF 126
            +VATGAEDSTVRLWDLR                  TSS RVA CLCRCF GEAV+SVVF
Sbjct:   37 LVATGAEDSTVRLWDLRDGATARTPGGSGTTSSGTTSSPRVAMCLCRCFGGEAVSSVVF 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98952.24011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGS5_ECTSI8.740e-1161.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98952contigP-canaliculata_contig98952:603..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-07_005190.1
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.0273802-CDS-P-canaliculata_contig98952:602..7281622817351.0273802-CDS-P-canaliculata_contig98952:602..728Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98952 603..728 -
1693495240.6330802-CDS-P-canaliculata_contig98952:602..7281693495240.6330802-CDS-P-canaliculata_contig98952:602..728Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98952 603..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98952.24011.1prot_P-canaliculata_contig98952.24011.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98952 603..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98952.24011.1

>prot_P-canaliculata_contig98952.24011.1 ID=prot_P-canaliculata_contig98952.24011.1|Name=mRNA_P-canaliculata_contig98952.24011.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=42bp
VVATGAEDSTVRLWDLRATSSSRVARCLCRCFDGEAVTSVVF
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mRNA from alignment at P-canaliculata_contig98952:603..728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98952.24011.1 ID=mRNA_P-canaliculata_contig98952.24011.1|Name=mRNA_P-canaliculata_contig98952.24011.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at P-canaliculata_contig98952:603..728- (Pelvetia canaliculata dioecious)
GTGGTGGCAACTGGGGCGGAGGACAGCACAGTGCGACTGTGGGACCTCAG
AGCCACCTCCTCGTCCCGGGTTGCGCGCTGCCTTTGCCGCTGCTTCGACG
GAGAGGCCGTCACCAGCGTCGTCTTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig98952:603..728-

>mRNA_P-canaliculata_contig98952.24011.1 ID=mRNA_P-canaliculata_contig98952.24011.1|Name=mRNA_P-canaliculata_contig98952.24011.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at P-canaliculata_contig98952:603..728- (Pelvetia canaliculata dioecious)
GTGGTGGCAACTGGGGCGGAGGACAGCACAGTGCGACTGTGGGACCTCAG
AGCCACCTCCTCGTCCCGGGTTGCGCGCTGCCTTTGCCGCTGCTTCGACG
GAGAGGCCGTCACCAGCGTCGTCTTCGTGGTGGCAACTGGGGCGGAGGAC
AGCACAGTGCGACTGTGGGACCTCAGAGCCACCTCCTCGTCCCGGGTTGC
GCGCTGCCTTTGCCGCTGCTTCGACGGAGAGGCCGTCACCAGCGTCGTCT
TC
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