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Homology
BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot
Match: A0A848UBG7_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UBG7_9GAMM) HSP 1 Score: 186 bits (473), Expect = 1.900e-55 Identity = 103/231 (44.59%), Postives = 158/231 (68.40%), Query Frame = 1 Query: 1 MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELFLTGLRFDLSLVGALCLVPVSVGPVLAMFDATRVVAKWFVLLWLFAALVLVLVTELLTPQLLAGEGVRPDASTFAELPALTASVGGLVADHPVPVTIGVLLAILILAAYVTRVESARFLRYPVSRGPAIALALVGGLVCLIAARSAIDPTAPALSVADARLGGEPIVDQIAMNSAWTTLRSL 693
M TLPATHLLRQ+L F VVFLL +IRA Y LW+ P + + LFL GLR+D++LVG +C+VPV +G +L+M D TR+ A++ + L+L L+LVL+ EL+TP L +G+RPD + + + +V++H +P+ +G LL +LIL A+ +R+E RFL+Y +S A+ LA++GGL C++A RS +D +PALS+AD+++ + V+ +A+N+A+ TL SL
Sbjct: 1 MKSTLPATHLLRQFLLFVLTVVFLLTLIRAAYGLWQYPKLADSDALVPLFLQGLRYDIALVGLVCIVPVILGTLLSMLDTTRLFARFLITLFLTGGLLLVLLLELITPWFLQTQGLRPDLQLLNGVENPGSVLSTIVSEHAIPLAVGALLCVLILIAFWSRMELQRFLKYRLSVPAALLLAILGGLACVVAIRSNVDLRSPALSLADSQISTDETVNDLALNTAYKTLYSL 231
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Bacteria |
Seed ortholog score | 63.9 |
Seed ortholog evalue | 1.1e-07 |
Seed eggNOG ortholog | 983545.Glaag_4547 |
Preferred name | mdoB |
KEGG ko | ko:K01002 |
KEGG Pathway | ko01100,map01100 |
EggNOG free text desc. | COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily |
EggNOG OGs | 1MVCM@1224,1RNJ3@1236,465CD@72275,COG1368@1,COG1368@2 |
EC | 2.7.8.20 |
COG Functional cat. | M |
Best tax level | Alteromonadaceae |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01000 |
Hectar predicted targeting category | signal peptide |
Exons | 1 |
Model size | 720 |
Cds size | 720 |
Stop | 1 |
Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817350.032245-CDS-P-canaliculata_contig98864:299..1019 | 1622817350.032245-CDS-P-canaliculata_contig98864:299..1019 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig98864 300..1019 + |
1693495239.8100927-CDS-P-canaliculata_contig98864:299..1019 | 1693495239.8100927-CDS-P-canaliculata_contig98864:299..1019 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig98864 300..1019 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98864.24002.1 >prot_P-canaliculata_contig98864.24002.1 ID=prot_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp
MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELF LTGLRFDLSLVGALCLVPVSVGPVLAMFDATRVVAKWFVLLWLFAALVLV LVTELLTPQLLAGEGVRPDASTFAELPALTASVGGLVADHPVPVTIGVLL AILILAAYVTRVESARFLRYPVSRGPAIALALVGGLVCLIAARSAIDPTA PALSVADARLGGEPIVDQIAMNSAWTTLRSLGASVLPGS* back to topmRNA from alignment at P-canaliculata_contig98864:300..1019+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig98864.24002.1 ID=mRNA_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at P-canaliculata_contig98864:300..1019+ (Pelvetia canaliculata dioecious) ATGAGCTTTACTCTGCCCGCGACCCACCTGCTGCGGCAGTATCTACGCTT
CGCCGCGGTCGTGGTGTTCCTGCTGCTGATGATCAGGGCGGGCTACGCCC
TGTGGCGTCTCCCGGCCATCGAGGCGGGCGGCGACCCGCTCGAATTGTTC
CTGACCGGTCTCCGGTTCGATCTCTCGCTCGTCGGGGCGCTGTGCCTCGT
GCCGGTGAGCGTCGGTCCGGTGCTCGCGATGTTCGACGCGACGCGTGTGG
TGGCGAAGTGGTTCGTGCTCCTCTGGCTGTTCGCCGCGCTCGTGCTGGTG
CTTGTCACCGAGCTGCTGACCCCGCAGCTTCTGGCCGGCGAGGGCGTGCG
GCCGGACGCCTCCACCTTCGCCGAGCTCCCCGCACTCACCGCCTCGGTCG
GCGGGCTGGTCGCCGATCACCCGGTACCCGTCACGATCGGCGTGCTGCTC
GCGATCCTGATCCTCGCGGCCTACGTCACCCGCGTCGAGAGCGCGCGCTT
CCTGCGCTACCCCGTCTCGCGCGGACCGGCGATCGCGCTGGCGCTCGTCG
GCGGCCTTGTCTGCCTGATCGCCGCGCGCTCGGCGATCGACCCGACGGCA
CCGGCGCTGTCGGTCGCGGACGCCCGCCTCGGTGGCGAGCCGATCGTCGA
TCAGATCGCGATGAACAGTGCCTGGACGACGCTGCGCTCCCTCGGCGCGT
CGGTGCTGCCCGGGAGCTGA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig98864:300..1019+ >mRNA_P-canaliculata_contig98864.24002.1 ID=mRNA_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig98864:300..1019+ (Pelvetia canaliculata dioecious) ATGAGCTTTACTCTGCCCGCGACCCACCTGCTGCGGCAGTATCTACGCTT CGCCGCGGTCGTGGTGTTCCTGCTGCTGATGATCAGGGCGGGCTACGCCC TGTGGCGTCTCCCGGCCATCGAGGCGGGCGGCGACCCGCTCGAATTGTTC CTGACCGGTCTCCGGTTCGATCTCTCGCTCGTCGGGGCGCTGTGCCTCGT GCCGGTGAGCGTCGGTCCGGTGCTCGCGATGTTCGACGCGACGCGTGTGG TGGCGAAGTGGTTCGTGCTCCTCTGGCTGTTCGCCGCGCTCGTGCTGGTG CTTGTCACCGAGCTGCTGACCCCGCAGCTTCTGGCCGGCGAGGGCGTGCG GCCGGACGCCTCCACCTTCGCCGAGCTCCCCGCACTCACCGCCTCGGTCG GCGGGCTGGTCGCCGATCACCCGGTACCCGTCACGATCGGCGTGCTGCTC GCGATCCTGATCCTCGCGGCCTACGTCACCCGCGTCGAGAGCGCGCGCTT CCTGCGCTACCCCGTCTCGCGCGGACCGGCGATCGCGCTGGCGCTCGTCG GCGGCCTTGTCTGCCTGATCGCCGCGCGCTCGGCGATCGACCCGACGGCA CCGGCGCTGTCGGTCGCGGACGCCCGCCTCGGTGGCGAGCCGATCGTCGA TCAGATCGCGATGAACAGTGCCTGGACGACGCTGCGCTCCCTCGGCGCGT CGGTGCTGCCCGGGAGCTGAATGAGCTTTACTCTGCCCGCGACCCACCTG CTGCGGCAGTATCTACGCTTCGCCGCGGTCGTGGTGTTCCTGCTGCTGAT GATCAGGGCGGGCTACGCCCTGTGGCGTCTCCCGGCCATCGAGGCGGGCG GCGACCCGCTCGAATTGTTCCTGACCGGTCTCCGGTTCGATCTCTCGCTC GTCGGGGCGCTGTGCCTCGTGCCGGTGAGCGTCGGTCCGGTGCTCGCGAT GTTCGACGCGACGCGTGTGGTGGCGAAGTGGTTCGTGCTCCTCTGGCTGT TCGCCGCGCTCGTGCTGGTGCTTGTCACCGAGCTGCTGACCCCGCAGCTT CTGGCCGGCGAGGGCGTGCGGCCGGACGCCTCCACCTTCGCCGAGCTCCC CGCACTCACCGCCTCGGTCGGCGGGCTGGTCGCCGATCACCCGGTACCCG TCACGATCGGCGTGCTGCTCGCGATCCTGATCCTCGCGGCCTACGTCACC CGCGTCGAGAGCGCGCGCTTCCTGCGCTACCCCGTCTCGCGCGGACCGGC GATCGCGCTGGCGCTCGTCGGCGGCCTTGTCTGCCTGATCGCCGCGCGCT CGGCGATCGACCCGACGGCACCGGCGCTGTCGGTCGCGGACGCCCGCCTC GGTGGCGAGCCGATCGTCGATCAGATCGCGATGAACAGTGCCTGGACGAC GCTGCGCTCCCTCGGCGCGTCGGTGCTGCCCGGGAGCTGA back to top
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