mRNA_P-canaliculata_contig98864.24002.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot
Match: A0A848UBG7_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UBG7_9GAMM) HSP 1 Score: 186 bits (473), Expect = 1.900e-55 Identity = 103/231 (44.59%), Postives = 158/231 (68.40%), Query Frame = 1 Query: 1 MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELFLTGLRFDLSLVGALCLVPVSVGPVLAMFDATRVVAKWFVLLWLFAALVLVLVTELLTPQLLAGEGVRPDASTFAELPALTASVGGLVADHPVPVTIGVLLAILILAAYVTRVESARFLRYPVSRGPAIALALVGGLVCLIAARSAIDPTAPALSVADARLGGEPIVDQIAMNSAWTTLRSL 693
M TLPATHLLRQ+L F VVFLL +IRA Y LW+ P + + LFL GLR+D++LVG +C+VPV +G +L+M D TR+ A++ + L+L L+LVL+ EL+TP L +G+RPD + + + +V++H +P+ +G LL +LIL A+ +R+E RFL+Y +S A+ LA++GGL C++A RS +D +PALS+AD+++ + V+ +A+N+A+ TL SL
Sbjct: 1 MKSTLPATHLLRQFLLFVLTVVFLLTLIRAAYGLWQYPKLADSDALVPLFLQGLRYDIALVGLVCIVPVILGTLLSMLDTTRLFARFLITLFLTGGLLLVLLLELITPWFLQTQGLRPDLQLLNGVENPGSVLSTIVSEHAIPLAVGALLCVLILIAFWSRMELQRFLKYRLSVPAALLLAILGGLACVVAIRSNVDLRSPALSLADSQISTDETVNDLALNTAYKTLYSL 231 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98864.24002.1 >prot_P-canaliculata_contig98864.24002.1 ID=prot_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELFback to top mRNA from alignment at P-canaliculata_contig98864:300..1019+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig98864.24002.1 ID=mRNA_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at P-canaliculata_contig98864:300..1019+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig98864:300..1019+ >mRNA_P-canaliculata_contig98864.24002.1 ID=mRNA_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig98864:300..1019+ (Pelvetia canaliculata dioecious)back to top |