Homology
BLAST of mRNA_P-canaliculata_contig98812.23999.1 vs. uniprot
Match: A0A5C6BX72_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BX72_9BACT) HSP 1 Score: 186 bits (471), Expect = 3.080e-52 Identity = 106/264 (40.15%), Postives = 153/264 (57.95%), Query Frame = 1 Query: 1 ALQYVDGWIETAADDPLPFLRKGELLMSAQRLSEAESYLTMSIQMDSNPHEAEKSLALLYEKTGNKIEALKILERETKANPTNVDLQLLMCNVLFGLNRDADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPHDVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQSRPDYLGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGDPGKAADFNKAAESL 792
AL +V+ WIE A+++P K ELL +A + AE +I+ D A LA L + G EA++ + E P N+ L+LL C+ L + R +A LR+VL L+F A H+LAS LA+RG+ A+VIE++ PL++ F D SL+YL+A A E GDA +D+ MQ HLD R+ L+ L + K + G + L IA +Y +YQWD AEP + RAI NSP + DA+ MA F KGD +A+ + +AA +
Sbjct: 197 ALHHVNEWIEAASENPRAIAYKAELLATAGDMDAAEKLFRTAIRQDPALRRARHGLAKLMKYVGKYQEAVEQFDIEIANEPDNITLRLLRCDALLQMQRSDEAIEGLRDVLELDELNFPARHSLASQLAKRGEHAQVIEVLTPLMNRFADDASLNYLLASAYSEQGDAERADQHMQKHLDGRKRLDELAMITKSLSDGEPDQDALLMIARDYMKYQWDVAEPWIVRAIQNSPDTPDAFLVMADFQRKKGDLEQASQYVQAARQV 460
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 804 |
| Cds size | 804 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817349.8704863-CDS-P-canaliculata_contig98812:4..808 | 1622817349.8704863-CDS-P-canaliculata_contig98812:4..808 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig98812 5..808 + |
| 1693495239.724625-CDS-P-canaliculata_contig98812:4..808 | 1693495239.724625-CDS-P-canaliculata_contig98812:4..808 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig98812 5..808 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig98812.23999.1 >prot_P-canaliculata_contig98812.23999.1 ID=prot_P-canaliculata_contig98812.23999.1|Name=mRNA_P-canaliculata_contig98812.23999.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=268bp
ALQYVDGWIETAADDPLPFLRKGELLMSAQRLSEAESYLTMSIQMDSNPH
EAEKSLALLYEKTGNKIEALKILERETKANPTNVDLQLLMCNVLFGLNRD
ADAAAVLREVLRTHPLHFTATHALASSLAERGQPAEVIELVKPLLHEFPH
DVSLSYLMAWANLELGDATESDRWMQIHLDARRALNRLFVELKKSTTGSQ
SRPDYLGIANEYFQYQWDKAEPALARAISNSPRSADAYRAMAKFSEMKGD
PGKAADFNKAAESLRNN* back to topmRNA from alignment at P-canaliculata_contig98812:5..808+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig98812.23999.1 ID=mRNA_P-canaliculata_contig98812.23999.1|Name=mRNA_P-canaliculata_contig98812.23999.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at P-canaliculata_contig98812:5..808+ (Pelvetia canaliculata dioecious)
GCTCTCCAATACGTCGATGGCTGGATCGAAACGGCAGCGGATGACCCACT
GCCGTTTCTAAGGAAGGGGGAATTATTGATGTCAGCTCAGCGGCTAAGCG
AAGCGGAATCATATCTGACGATGTCAATACAAATGGATTCAAATCCGCAC
GAAGCAGAAAAATCTCTGGCGTTGCTGTACGAAAAGACTGGTAACAAAAT
CGAAGCACTGAAAATCCTGGAACGCGAAACCAAGGCGAATCCTACTAACG
TTGATCTGCAGCTGCTGATGTGCAATGTCCTGTTCGGATTGAACCGCGAC
GCTGATGCCGCTGCGGTACTTCGTGAAGTACTTCGCACACACCCGCTTCA
TTTTACGGCGACGCATGCGTTGGCATCTTCGTTGGCAGAGCGAGGGCAGC
CCGCCGAGGTCATCGAGCTTGTTAAGCCGCTGCTGCATGAATTTCCCCAC
GACGTTTCATTAAGCTATCTGATGGCATGGGCAAACTTGGAACTCGGAGA
CGCCACCGAGTCTGACCGTTGGATGCAAATCCATCTCGATGCCCGCAGGG
CGTTGAATCGACTATTCGTGGAGCTAAAGAAGTCCACGACAGGTTCTCAA
AGCCGTCCAGACTATCTAGGAATTGCCAACGAGTACTTTCAGTATCAGTG
GGACAAAGCTGAACCCGCTCTAGCGAGAGCAATTAGTAACAGCCCCCGTT
CCGCAGATGCCTATCGAGCGATGGCGAAATTTTCCGAAATGAAAGGAGAT
CCAGGCAAGGCTGCTGACTTTAACAAAGCCGCCGAAAGCTTGCGAAATAA
CTGA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig98812:5..808+ >mRNA_P-canaliculata_contig98812.23999.1 ID=mRNA_P-canaliculata_contig98812.23999.1|Name=mRNA_P-canaliculata_contig98812.23999.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at P-canaliculata_contig98812:5..808+ (Pelvetia canaliculata dioecious)
GCTCTCCAATACGTCGATGGCTGGATCGAAACGGCAGCGGATGACCCACT
GCCGTTTCTAAGGAAGGGGGAATTATTGATGTCAGCTCAGCGGCTAAGCG
AAGCGGAATCATATCTGACGATGTCAATACAAATGGATTCAAATCCGCAC
GAAGCAGAAAAATCTCTGGCGTTGCTGTACGAAAAGACTGGTAACAAAAT
CGAAGCACTGAAAATCCTGGAACGCGAAACCAAGGCGAATCCTACTAACG
TTGATCTGCAGCTGCTGATGTGCAATGTCCTGTTCGGATTGAACCGCGAC
GCTGATGCCGCTGCGGTACTTCGTGAAGTACTTCGCACACACCCGCTTCA
TTTTACGGCGACGCATGCGTTGGCATCTTCGTTGGCAGAGCGAGGGCAGC
CCGCCGAGGTCATCGAGCTTGTTAAGCCGCTGCTGCATGAATTTCCCCAC
GACGTTTCATTAAGCTATCTGATGGCATGGGCAAACTTGGAACTCGGAGA
CGCCACCGAGTCTGACCGTTGGATGCAAATCCATCTCGATGCCCGCAGGG
CGTTGAATCGACTATTCGTGGAGCTAAAGAAGTCCACGACAGGTTCTCAA
AGCCGTCCAGACTATCTAGGAATTGCCAACGAGTACTTTCAGTATCAGTG
GGACAAAGCTGAACCCGCTCTAGCGAGAGCAATTAGTAACAGCCCCCGTT
CCGCAGATGCCTATCGAGCGATGGCGAAATTTTCCGAAATGAAAGGAGAT
CCAGGCAAGGCTGCTGACTTTAACAAAGCCGCCGAAAGCTTGCGAAATAA
CTGAGCTCTCCAATACGTCGATGGCTGGATCGAAACGGCAGCGGATGACC
CACTGCCGTTTCTAAGGAAGGGGGAATTATTGATGTCAGCTCAGCGGCTA
AGCGAAGCGGAATCATATCTGACGATGTCAATACAAATGGATTCAAATCC
GCACGAAGCAGAAAAATCTCTGGCGTTGCTGTACGAAAAGACTGGTAACA
AAATCGAAGCACTGAAAATCCTGGAACGCGAAACCAAGGCGAATCCTACT
AACGTTGATCTGCAGCTGCTGATGTGCAATGTCCTGTTCGGATTGAACCG
CGACGCTGATGCCGCTGCGGTACTTCGTGAAGTACTTCGCACACACCCGC
TTCATTTTACGGCGACGCATGCGTTGGCATCTTCGTTGGCAGAGCGAGGG
CAGCCCGCCGAGGTCATCGAGCTTGTTAAGCCGCTGCTGCATGAATTTCC
CCACGACGTTTCATTAAGCTATCTGATGGCATGGGCAAACTTGGAACTCG
GAGACGCCACCGAGTCTGACCGTTGGATGCAAATCCATCTCGATGCCCGC
AGGGCGTTGAATCGACTATTCGTGGAGCTAAAGAAGTCCACGACAGGTTC
TCAAAGCCGTCCAGACTATCTAGGAATTGCCAACGAGTACTTTCAGTATC
AGTGGGACAAAGCTGAACCCGCTCTAGCGAGAGCAATTAGTAACAGCCCC
CGTTCCGCAGATGCCTATCGAGCGATGGCGAAATTTTCCGAAATGAAAGG
AGATCCAGGCAAGGCTGCTGACTTTAACAAAGCCGCCGAAAGCTTGCGAA
ATAACTGA back to top
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