mRNA_P-canaliculata_contig9872.23980.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9872.23980.1
Unique NamemRNA_P-canaliculata_contig9872.23980.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match: A0A6H5KU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU38_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.660e-35
Identity = 115/309 (37.22%), Postives = 158/309 (51.13%), Query Frame = 1 
Query:    1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLL------------------------EKQRKTTTYRQVQHSSHPRHEILPQRQHRWDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRGDGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 849
            TR S  RW K  E+S+QY+R W  FLS+  +HFDGEA +RK++S I   HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MML+VTAFI LAR+ A+R                               + + +  ++RQ +H    R+   P+   R   +    L   +C+ +Q+R +    +  G  +   +N A  GV  D            +W        N  +Y    + A G    S+   +   S SAP LLPP+ G + + TPP P++LK VLSTS+ +A      FGL
Sbjct: 1962 TRGSGNRWHKKVEQSRQYLRMWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLNVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGEHRQPSWRQHEHQQEERY-CHPEYHRRDGTEDQQRLNNYMCEQQQRRQKQGEEQRSGHEWA--INDASTGVIGD--------AAENSW----HSQRNKQDYGAEPISAGGDAGRSRGEAQSQRSDSAPSLLPPIEGWLTEGTPPSPSSLKTVLSTSTSVAVGVPSGFGL 2255
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BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match: D8LGD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.530e-32
Identity = 111/295 (37.63%), Postives = 148/295 (50.17%), Query Frame = 1 
Query:    1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLLEKQRKTTTYRQVQHSSHPRHEILPQRQHR---WDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRG-------DGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 849
            TR S  RW K  E+S+QY+R+W  FLS+  +HFDGEA +RK++S I   HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MMLDVTAFI LAR+ A+R                               + +HR   W  QH           +  R ++   + + + +  +        G++ R        D   GV+            N  +Y    + A G    S+   +   S SAP LLPP+ G + + TPP PN+LK VLSTS+ +A      FGL
Sbjct: 2014 TRGSGNRWHKKVEQSRQYLRRWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLDVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGEHRQPSWR-QHQRQQEEWYSHPEDHRRDSAEDKQRLNNYIWEQXXXXXKQGEERRSGHEWARDDASTGVIGDAAENNWHSQRNKQDYGAEPISAGGNAGRSRGEAQSRRSDSAPSLLPPIEGWLTEGTPPSPNSLKTVLSTSTSVAVGVPSGFGL 2307
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU38_9PHAE5.660e-3537.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGD3_ECTSI3.530e-3237.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9872contigP-canaliculata_contig9872:9825..10992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002540.1
Exons2
Model size849
Cds size849
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817348.5892243-CDS-P-canaliculata_contig9872:9824..99321622817348.5892243-CDS-P-canaliculata_contig9872:9824..9932Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9872 9825..9932 +
1693495238.9463181-CDS-P-canaliculata_contig9872:9824..99321693495238.9463181-CDS-P-canaliculata_contig9872:9824..9932Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9872 9825..9932 +
1622817348.6036682-CDS-P-canaliculata_contig9872:10251..109921622817348.6036682-CDS-P-canaliculata_contig9872:10251..10992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9872 10252..10992 +
1693495238.9579394-CDS-P-canaliculata_contig9872:10251..109921693495238.9579394-CDS-P-canaliculata_contig9872:10251..10992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9872 10252..10992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9872.23980.1prot_P-canaliculata_contig9872.23980.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9872 9825..10992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9872.23980.1

>prot_P-canaliculata_contig9872.23980.1 ID=prot_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=283bp
TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDH
PDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIAL
ARKLAKRQHRLQLLEKQRKTTTYRQVQHSSHPRHEILPQRQHRWDIQHHC
SLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRGDGRKGVV
NKTWCRGGKLWGNDNEYEGAYVADGTISSSQFNLRRSDSASAPLLLPPLT
GLMYDTPPLPNTLKVVLSTSSCLAPAAHKHFGL
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mRNA from alignment at P-canaliculata_contig9872:9825..10992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9872.23980.1 ID=mRNA_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-canaliculata_contig9872:9825..10992+ (Pelvetia canaliculata dioecious)
ACAAGACGAAGCCGCAAACGCTGGAGCAAAGCGAGGGAGCGATCGCAACA
ATATATTCGACAGTGGGGCAAATTTCTGTCTCAGGTTGACAAGCACTTTG
ATGGCGAGGTGGGTAGGGTCCGTCAATGTTACAGCAAACATGTTATTGGA
GAAATACGTTCCGTCGACGTGGTAGTCGCGCCGATCATTCGAGACGTCGA
GATCTTCGAAGCCCGTATCATATTCGTCCTTTCGTTTCAGAAGCCTCCAT
CTGGCTGTTGACTCGAGCTTGACGCTGTTGTGAGTATGGTGAAGGCCCCC
CTAGATTGTGCACTAGCCGAAGTAAATGCAACGTACTTCCGCCGAACAAT
TGTTACCCTTGAACGTCGTTTTATCTTGGTCCTTCTGCTGTAACATGCGT
CCATACGCTCACCATCTTCCGGTCTAGGCCCTGTTACGAAAAAAGCTCTC
CAAGATTTGTCTAGACCATCCGGACGTGAGCAACGAAGTTACTTTCGTCG
CTCTGGCACTGTCTCGCGGCAGGGCGTTTGAAGCCTCCGCCGTCCTCCAC
CTGGCGCGGGCCAAGGAGGAGGCCACCTTGGTGGTCATGATGCTCGATGT
CACCGCGTTTATTGCTCTGGCAAGAAAACTGGCCAAGAGACAACACCGGT
TGCAGCTACTTGAGAAGCAGCGCAAAACCACAACATATCGACAAGTCCAG
CACTCGTCGCATCCTCGCCACGAAATCCTCCCCCAAAGACAACATCGATG
GGATATCCAACACCACTGCAGCCTTCCCAGAAACATATGCCAGTCTAAAC
AGCAACGCGGAGAAAATACTCCACGACGGTGGCAAGGAGATTATTTCCCC
GCAGACGTCAACGGCGCGTTCGTTGGCGTAGGCGACGATCCAAGGGGCGA
TGGCAGGAAGGGGGTCGTAAATAAAACATGGTGTCGTGGAGGAAAACTTT
GGGGAAATGATAACGAGTACGAGGGGGCGTACGTCGCCGATGGAACTATT
AGTAGCAGCCAGTTCAATTTGAGGCGTAGCGACTCCGCTTCTGCTCCGTT
GTTACTGCCACCGTTGACGGGCTTGATGTACGACACACCTCCGTTACCCA
ACACGCTGAAGGTAGTCCTATCGACAAGCTCGTGTCTGGCGCCTGCCGCT
CACAAGCATTTTGGTTTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9872:9825..10992+

>mRNA_P-canaliculata_contig9872.23980.1 ID=mRNA_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at P-canaliculata_contig9872:9825..10992+ (Pelvetia canaliculata dioecious)
ACAAGACGAAGCCGCAAACGCTGGAGCAAAGCGAGGGAGCGATCGCAACA
ATATATTCGACAGTGGGGCAAATTTCTGTCTCAGGTTGACAAGCACTTTG
ATGGCGAGACAAGACGAAGCCGCAAACGCTGGAGCAAAGCGAGGGAGCGA
TCGCAACAATATATTCGACAGTGGGGCAAATTTCTGTCTCAGGTTGACAA
GCACTTTGATGGCGAGGCCCTGTTACGAAAAAAGCTCTCCAAGATTTGTC
TAGACCATCCGGACGTGAGCAACGAAGTTACTTTCGTCGCTCTGGCACTG
TCTCGCGGCAGGGCGTTTGAAGCCTCCGCCGTCCTCCACCTGGCGCGGGC
CAAGGAGGAGGCCACCTTGGTGGTCATGATGCTCGATGTCACCGCGTTTA
TTGCTCTGGCAAGAAAACTGGCCAAGAGACAACACCGGTTGCAGCTACTT
GAGAAGCAGCGCAAAACCACAACATATCGACAAGTCCAGCACTCGTCGCA
TCCTCGCCACGAAATCCTCCCCCAAAGACAACATCGATGGGATATCCAAC
ACCACTGCAGCCTTCCCAGAAACATATGCCAGTCTAAACAGCAACGCGGA
GAAAATACTCCACGACGGTGGCAAGGAGATTATTTCCCCGCAGACGTCAA
CGGCGCGTTCGTTGGCGTAGGCGACGATCCAAGGGGCGATGGCAGGAAGG
GGGTCGTAAATAAAACATGGTGTCGTGGAGGAAAACTTTGGGGAAATGAT
AACGAGTACGAGGGGGCGTACGTCGCCGATGGAACTATTAGTAGCAGCCA
GTTCAATTTGAGGCGTAGCGACTCCGCTTCTGCTCCGTTGTTACTGCCAC
CGTTGACGGGCTTGATGTACGACACACCTCCGTTACCCAACACGCTGAAG
GTAGTCCTATCGACAAGCTCGTGTCTGGCGCCTGCCGCTCACAAGCATTT
TGGTTTGGCCCTGTTACGAAAAAAGCTCTCCAAGATTTGTCTAGACCATC
CGGACGTGAGCAACGAAGTTACTTTCGTCGCTCTGGCACTGTCTCGCGGC
AGGGCGTTTGAAGCCTCCGCCGTCCTCCACCTGGCGCGGGCCAAGGAGGA
GGCCACCTTGGTGGTCATGATGCTCGATGTCACCGCGTTTATTGCTCTGG
CAAGAAAACTGGCCAAGAGACAACACCGGTTGCAGCTACTTGAGAAGCAG
CGCAAAACCACAACATATCGACAAGTCCAGCACTCGTCGCATCCTCGCCA
CGAAATCCTCCCCCAAAGACAACATCGATGGGATATCCAACACCACTGCA
GCCTTCCCAGAAACATATGCCAGTCTAAACAGCAACGCGGAGAAAATACT
CCACGACGGTGGCAAGGAGATTATTTCCCCGCAGACGTCAACGGCGCGTT
CGTTGGCGTAGGCGACGATCCAAGGGGCGATGGCAGGAAGGGGGTCGTAA
ATAAAACATGGTGTCGTGGAGGAAAACTTTGGGGAAATGATAACGAGTAC
GAGGGGGCGTACGTCGCCGATGGAACTATTAGTAGCAGCCAGTTCAATTT
GAGGCGTAGCGACTCCGCTTCTGCTCCGTTGTTACTGCCACCGTTGACGG
GCTTGATGTACGACACACCTCCGTTACCCAACACGCTGAAGGTAGTCCTA
TCGACAAGCTCGTGTCTGGCGCCTGCCGCTCACAAGCATTTTGGTTTG
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