Homology
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match:
A0A6H5KU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU38_9PHAE)
HSP 1 Score: 144 bits (362), Expect = 5.660e-35
Identity = 115/309 (37.22%), Postives = 158/309 (51.13%), Query Frame = 1
Query: 1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLL------------------------EKQRKTTTYRQVQHSSHPRHEILPQRQHRWDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRGDGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 849
TR S RW K E+S+QY+R W FLS+ +HFDGEA +RK++S I HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MML+VTAFI LAR+ A+R + + + ++RQ +H R+ P+ R + L +C+ +Q+R + + G + +N A GV D +W N +Y + A G S+ + S SAP LLPP+ G + + TPP P++LK VLSTS+ +A FGL
Sbjct: 1962 TRGSGNRWHKKVEQSRQYLRMWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLNVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKGEHRQPSWRQHEHQQEERY-CHPEYHRRDGTEDQQRLNNYMCEQQQRRQKQGEEQRSGHEWA--INDASTGVIGD--------AAENSW----HSQRNKQDYGAEPISAGGDAGRSRGEAQSQRSDSAPSLLPPIEGWLTEGTPPSPSSLKTVLSTSTSVAVGVPSGFGL 2255
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Match:
D8LGD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD3_ECTSI)
HSP 1 Score: 135 bits (341), Expect = 3.530e-32
Identity = 111/295 (37.63%), Postives = 148/295 (50.17%), Query Frame = 1
Query: 1 TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDHPDVSNEVTFVALALSRGRAFEASAVLHLARAKEEATLVVMMLDVTAFIALARKLAKRQHRLQLLEKQRKTTTYRQVQHSSHPRHEILPQRQHR---WDIQHHCSLPRNICQSKQQRGENTPRRWQGDYFPADVNGAFVGVGDDPRG-------DGRKGVVNKTWCRGGKLWGNDNEYEGAYV-ADGTISSSQFNLRRSDSASAPLLLPPLTGLMYD-TPPLPNTLKVVLSTSSCLAPAAHKHFGL 849
TR S RW K E+S+QY+R+W FLS+ +HFDGEA +RK++S I HPDVSNEV FVALA SRGR+ EA+AVLHL RAK+EA LV MMLDVTAFI LAR+ A+R + +HR W QH + R ++ + + + + + G++ R D GV+ N +Y + A G S+ + S SAP LLPP+ G + + TPP PN+LK VLSTS+ +A FGL
Sbjct: 2014 TRGSGNRWHKKVEQSRQYLRRWEVFLSRAHRHFDGEADVRKRMSVIRRAHPDVSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLDVTAFIGLAREAAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGEHRQPSWR-QHQRQQEEWYSHPEDHRRDSAEDKQRLNNYIWEQXXXXXKQGEERRSGHEWARDDASTGVIGDAAENNWHSQRNKQDYGAEPISAGGNAGRSRGEAQSRRSDSAPSLLPPIEGWLTEGTPPSPNSLKTVLSTSTSVAVGVPSGFGL 2307
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9872.23980.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 5.66e-35 / Id = 37.22 Expect = 3.53e-32 / Id = 37.63 Sequence A0A6H5KU38_9PHAE D8LGD3_ECTSI
Match Name E-value Identity Description
A0A6H5KU38_9PHAE 5.660e-35 37.22 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LGD3_ECTSI 3.530e-32 37.63 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-06_002540.1 Exons 2 Model size 849 Cds size 849 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817348.5892243-CDS-P-canaliculata_contig9872:9824..9932 1622817348.5892243-CDS-P-canaliculata_contig9872:9824..9932 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9872 9825..9932 + 1693495238.9463181-CDS-P-canaliculata_contig9872:9824..9932 1693495238.9463181-CDS-P-canaliculata_contig9872:9824..9932 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9872 9825..9932 + 1622817348.6036682-CDS-P-canaliculata_contig9872:10251..10992 1622817348.6036682-CDS-P-canaliculata_contig9872:10251..10992 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9872 10252..10992 + 1693495238.9579394-CDS-P-canaliculata_contig9872:10251..10992 1693495238.9579394-CDS-P-canaliculata_contig9872:10251..10992 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9872 10252..10992 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9872.23980.1
>prot_P-canaliculata_contig9872.23980.1 ID=prot_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=283bp
TRRSRKRWSKARERSQQYIRQWGKFLSQVDKHFDGEALLRKKLSKICLDH back to top mRNA from alignment at P-canaliculata_contig9872:9825..10992+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9872.23980.1 ID=mRNA_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-canaliculata_contig9872:9825..10992+ (Pelvetia canaliculata dioecious)ACAAGACGAAGCCGCAAACGCTGGAGCAAAGCGAGGGAGCGATCGCAACA
ATATATTCGACAGTGGGGCAAATTTCTGTCTCAGGTTGACAAGCACTTTG
ATGGCGAG GTGGGTAGGGTCCGTCAATGTTACAGCAAACATGTTATTGGA
GAAATACGTTCCGTCGACGTGGTAGTCGCGCCGATCATTCGAGACGTCGA
GATCTTCGAAGCCCGTATCATATTCGTCCTTTCGTTTCAGAAGCCTCCAT
CTGGCTGTTGACTCGAGCTTGACGCTGTTGTGAGTATGGTGAAGGCCCCC
CTAGATTGTGCACTAGCCGAAGTAAATGCAACGTACTTCCGCCGAACAAT
TGTTACCCTTGAACGTCGTTTTATCTTGGTCCTTCTGCTGTAACATGCGT
CCATACGCTCACCATCTTCCGGTCTAGGCCCTGTTACGAAAAAAGCTCTC
CAAGATTTGTCTAGACCATCCGGACGTGAGCAACGAAGTTACTTTCGTCG
CTCTGGCACTGTCTCGCGGCAGGGCGTTTGAAGCCTCCGCCGTCCTCCAC
CTGGCGCGGGCCAAGGAGGAGGCCACCTTGGTGGTCATGATGCTCGATGT
CACCGCGTTTATTGCTCTGGCAAGAAAACTGGCCAAGAGACAACACCGGT
TGCAGCTACTTGAGAAGCAGCGCAAAACCACAACATATCGACAAGTCCAG
CACTCGTCGCATCCTCGCCACGAAATCCTCCCCCAAAGACAACATCGATG
GGATATCCAACACCACTGCAGCCTTCCCAGAAACATATGCCAGTCTAAAC
AGCAACGCGGAGAAAATACTCCACGACGGTGGCAAGGAGATTATTTCCCC
GCAGACGTCAACGGCGCGTTCGTTGGCGTAGGCGACGATCCAAGGGGCGA
TGGCAGGAAGGGGGTCGTAAATAAAACATGGTGTCGTGGAGGAAAACTTT
GGGGAAATGATAACGAGTACGAGGGGGCGTACGTCGCCGATGGAACTATT
AGTAGCAGCCAGTTCAATTTGAGGCGTAGCGACTCCGCTTCTGCTCCGTT
GTTACTGCCACCGTTGACGGGCTTGATGTACGACACACCTCCGTTACCCA
ACACGCTGAAGGTAGTCCTATCGACAAGCTCGTGTCTGGCGCCTGCCGCT
CACAAGCATTTTGGTTTG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9872:9825..10992+
>mRNA_P-canaliculata_contig9872.23980.1 ID=mRNA_P-canaliculata_contig9872.23980.1|Name=mRNA_P-canaliculata_contig9872.23980.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at P-canaliculata_contig9872:9825..10992+ (Pelvetia canaliculata dioecious) back to top