mRNA_P-canaliculata_contig9853.23964.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI) HSP 1 Score: 100 bits (248), Expect = 2.340e-18 Identity = 118/401 (29.43%), Postives = 167/401 (41.65%), Query Frame = 3
Query: 303 QVLARRALMLRFWKELFLVMSQS---KRNPSSDAVEGS---FRAGSEAITALPAQEYRGVEAE----PLLYAGV-PLDDDRMLLLLE--PTAKGA-----WRVKSTLRLHLYVSDPPCGDASIYQQPVESPPHHGLRSSPFESDHIHGGGASTCCGEGGAERETRETSAFSCSEMKCVANQPSLAEFFHSSTSSISNKFEMEKNREMGECNNPGEGCHEKNGECCCDXXXGGDGGNDREINFKPTPRGDERKSCDRTKKGHRCNVPDATGPSVLNLSSSYQCRCPYPTVEKSRDRGDGRSSLGERDRADKMTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ----VSWL 1439
+VLARRAL+LR W+EL L +S + +++ + D +G +G + P+ + P LY GV P +DD +LLLE P A A WR+K +RLHLY+SD PCGDASIY+Q ++P ++ GGG++ C GG + + S++ + P + +R GE G+ RGD +++ RC V ++ LS + P P + +R +SL D K R+ +EQ +GALRIKSSRSNISEEGRT+SMSCSDKL+KWA LGVQ SW+
Sbjct: 89 EVLARRALLLRLWRELHLRVSSAAGRQQDVTIDERKGGGTPCNSGRSDGRSTPSSSTTAATVDAHPQPPLYGGVLPGEDDGRILLLERSPQATDAGACISWRLKPYIRLHLYISDAPCGDASIYEQKRQAP-------------NVGGGGSARC---GGGDGDPGNDSSWD----DAPRSTP------------------LAGSRSDGERRGRGD-----------------------------ADRGDAKRA--------RCAV------AIAGLSDAV-APSPRPDLPLDEERSCSAASLNPLD---------------CKPREP-------------------------EEQQVGALRIKSSRSNISEEGRTMSMSCSDKLAKWAFLGVQGGLLASWV 367
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S3LDF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDF6_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 7.450e-8 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 3
Query: 1179 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTL--RIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
+ FTGAK+I + +E + ++ G GG E L R+ RE+ QLLG LR KS RSN+ R+ S+SCSDK+ +W VLG+Q
Sbjct: 29 LQFTGAKVIVS-QETKVSVQDCG-----GGSEASLLQDSRVARERVQLLGRLRTKSGRSNLQAHQRSDSLSCSDKIVRWCVLGLQ 107
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: K0R2A8_THAOC (A to I editase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2A8_THAOC) HSP 1 Score: 63.2 bits (152), Expect = 7.870e-7 Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 3
Query: 1179 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
+ FTGAKII + E T EG++ +R+ REQ Q++ LR+KSSRSNI + R++S+ C+DK+ +W+V G+Q
Sbjct: 194 VNFTGAKIILSGGEEHQTTNITSLQEE---PEGEVKVRLGREQVQIVKKLRVKSSRSNIPNKMRSMSLCCADKIVRWSVFGLQ 273
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A835ZEK1_9STRA (A to I editase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.050e-5 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 3
Query: 1275 GDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL*ASIDRRPRLL*NIRNRVTLRALEDVK 1520
G L ++RE Q +G LR+KS RS++ E RT SMSCSDKL++WAVLG+Q L ++ P LL ++ RA D +
Sbjct: 274 GAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQGRLLRRWLE--PVLLSSVTVSADARAAPDAQ 353
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: B7FPV9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPV9_PHATC) HSP 1 Score: 56.6 bits (135), Expect = 6.250e-5 Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 3
Query: 1179 MTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLR---IDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
+ +TGAK+I + + T ++ G ++L + RE QLLG LR K+ RSNI R+ SMSCSDK+ +W VLG+Q
Sbjct: 170 LQYTGAKVIVS-EHTKVTGKDCGGDHQLLLKSSSAIFSSSYVAREDVQLLGKLRTKAGRSNIEAARRSTSMSCSDKIVRWMVLGLQ 254
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A1Z5KAH5_FISSO (tRNA-specific adenosine deaminase 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAH5_FISSO) HSP 1 Score: 57.0 bits (136), Expect = 6.740e-5 Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 3
Query: 1104 YPT-VEKSRDRGDGRSSLGERDRADKMTFTGAKIIAAVKERDATDREFGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQ 1427
YP V + + D +S+ ++ + FTGAK+I + + G + + + L + Q Q +G LR KS RSN+ R+ SMSCSDKL +W+VLG+Q
Sbjct: 147 YPVRVNDDKSKSDNKSTNNTHPPSE-LLFTGAKVIVSSSDATEVAETGGPLLQSHNSQQHL---VREPQAQSVGQLRSKSGRSNLESSRRSFSMSCSDKLVRWSVLGLQ 251
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S2U6Z4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Z4_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 6.770e-5 Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 3
Query: 1203 IAAVKERDATDREFGAVNRLGGMEGDLTLRIDRE-QEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL*ASIDRRPRL 1469
+A + + A+ R+ + GG G + RE EQ+LGALR KS RSN+ R+ SMSCSDKL +W +LG+Q S L I RL
Sbjct: 311 LAVLPQTSASTRDGDMDGKGGGCAG-----VAREPNEQILGALRTKSGRSNLPAHLRSTSMSCSDKLVRWGILGLQGSLLSRYIPHAIRL 395
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Match: A0A7S3PX48_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX48_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 9.940e-5 Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3
Query: 1179 MTFTGAKIIA---AVKERDATDRE----FGAVNRLGGMEGDLTLRIDREQEQLLGALRIKSSRSNISEEGRTISMSCSDKLSKWAVLGVQVSWL*ASIDRRP 1463
+ FTGAKII K+R A + G V ++ I RE+ Q+ ALR+KS RSN+ R SMSCSDKL KW++LG+Q S + + + P
Sbjct: 215 VNFTGAKIIVPSECSKKRKAFESSNLTFCGNVKSSKEVDKREMSFIARERLQITSALRLKSGRSNLPAHMRCSSMSCSDKLCKWSILGLQGSGFLSCLLKNP 316 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9853.23964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9853.23964.1 >prot_P-canaliculata_contig9853.23964.1 ID=prot_P-canaliculata_contig9853.23964.1|Name=mRNA_P-canaliculata_contig9853.23964.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=401bp MDVERVDTEQDGRTRHARPNFQVLARRALMLRFWKELFLVMSQSKRNPSSback to top mRNA from alignment at P-canaliculata_contig9853:70..2687- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9853.23964.1 ID=mRNA_P-canaliculata_contig9853.23964.1|Name=mRNA_P-canaliculata_contig9853.23964.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2618bp|location=Sequence derived from alignment at P-canaliculata_contig9853:70..2687- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9853:70..2687- >mRNA_P-canaliculata_contig9853.23964.1 ID=mRNA_P-canaliculata_contig9853.23964.1|Name=mRNA_P-canaliculata_contig9853.23964.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2406bp|location=Sequence derived from alignment at P-canaliculata_contig9853:70..2687- (Pelvetia canaliculata dioecious)back to top |