mRNA_P-canaliculata_contig9851.23961.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9851.23961.1
Unique NamemRNA_P-canaliculata_contig9851.23961.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5L4K2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 6.450e-11
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL V P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:  402 RWPTCVPLDVIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKD 474
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.790e-11
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL   P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:   60 RWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHSIVVDVWQTGDVPQQWKD 132
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.560e-11
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL   P+++E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:  125 RWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKD 197
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5K8I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.080e-10
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL   P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:   91 RWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKD 163
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.220e-10
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            QWP  +PL   P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:   58 QWPTYVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKD 130
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5L9V0_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9V0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.190e-10
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL   P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W  G+ P+QWKD
Sbjct:   58 RWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWLAGDVPQQWKD 130
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5JP02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP02_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.290e-10
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL   P++ E+ +A+R++AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:  309 RWPTCVPLDDIPSLLEIEEAVRAMANRKAVGPDDLQAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKD 381
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5K0F8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.410e-10
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL   P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:  115 RWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKD 187
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.050e-10
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            QWP  +PL   P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:  356 QWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGLLREFHAIVVDVWQTGDVPQQWKD 428
[Close]
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Match: A0A6H5JV82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV82_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.430e-10
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   52 QWPENMPLGVQPTMQELTDAIRSLANGKGVGPDGVSVDT----LNGDPALRRRMLDIVFRIWRGGEAPKQWKD 258
            +WP  +PL   P++ E+ +A+R +AN K VGPD +  +     L+GD  L R    IV  +W+ G+ P+QWKD
Sbjct:   55 RWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKD 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9851.23961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K2_9PHAE6.450e-1141.10Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JQE0_9PHAE6.790e-1139.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L012_9PHAE8.560e-1139.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I2_9PHAE1.080e-1039.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZD4_9PHAE1.220e-1041.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L9V0_9PHAE2.190e-1039.73Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JP02_9PHAE2.290e-1039.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0F8_9PHAE2.410e-1039.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JY74_9PHAE3.050e-1041.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV82_9PHAE3.430e-1039.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9851contigP-canaliculata_contig9851:6..263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.804714-CDS-P-canaliculata_contig9851:5..2631622817346.804714-CDS-P-canaliculata_contig9851:5..263Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9851 6..263 -
1693495237.7937005-CDS-P-canaliculata_contig9851:5..2631693495237.7937005-CDS-P-canaliculata_contig9851:5..263Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9851 6..263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9851.23961.1prot_P-canaliculata_contig9851.23961.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9851 6..263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9851.23961.1

>prot_P-canaliculata_contig9851.23961.1 ID=prot_P-canaliculata_contig9851.23961.1|Name=mRNA_P-canaliculata_contig9851.23961.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=86bp
MGPVVSNSLTPSHRGFDQWPENMPLGVQPTMQELTDAIRSLANGKGVGPD
GVSVDTLNGDPALRRRMLDIVFRIWRGGEAPKQWKD
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mRNA from alignment at P-canaliculata_contig9851:6..263-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9851.23961.1 ID=mRNA_P-canaliculata_contig9851.23961.1|Name=mRNA_P-canaliculata_contig9851.23961.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at P-canaliculata_contig9851:6..263- (Pelvetia canaliculata dioecious)
ATGGGTCCGGTGGTCTCAAACTCTCTTACGCCAAGTCACCGAGGCTTTGA
CCAGTGGCCCGAGAATATGCCGCTAGGAGTTCAGCCCACGATGCAGGAGC
TGACAGACGCCATCCGCTCGTTGGCAAACGGAAAGGGCGTTGGACCGGAC
GGAGTCTCCGTCGACACTCTCAATGGTGATCCCGCCCTACGCCGGAGAAT
GCTCGATATCGTATTTCGTATTTGGAGGGGGGGCGAGGCGCCGAAGCAGT
GGAAAGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig9851:6..263-

>mRNA_P-canaliculata_contig9851.23961.1 ID=mRNA_P-canaliculata_contig9851.23961.1|Name=mRNA_P-canaliculata_contig9851.23961.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at P-canaliculata_contig9851:6..263- (Pelvetia canaliculata dioecious)
ATGGGTCCGGTGGTCTCAAACTCTCTTACGCCAAGTCACCGAGGCTTTGA
CCAGTGGCCCGAGAATATGCCGCTAGGAGTTCAGCCCACGATGCAGGAGC
TGACAGACGCCATCCGCTCGTTGGCAAACGGAAAGGGCGTTGGACCGGAC
GGAGTCTCCGTCGACACTCTCAATGGTGATCCCGCCCTACGCCGGAGAAT
GCTCGATATCGTATTTCGTATTTGGAGGGGGGGCGAGGCGCCGAAGCAGT
GGAAAGATATGGGTCCGGTGGTCTCAAACTCTCTTACGCCAAGTCACCGA
GGCTTTGACCAGTGGCCCGAGAATATGCCGCTAGGAGTTCAGCCCACGAT
GCAGGAGCTGACAGACGCCATCCGCTCGTTGGCAAACGGAAAGGGCGTTG
GACCGGACGGAGTCTCCGTCGACACTCTCAATGGTGATCCCGCCCTACGC
CGGAGAATGCTCGATATCGTATTTCGTATTTGGAGGGGGGGCGAGGCGCC
GAAGCAGTGGAAAGAT
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