mRNA_P-canaliculata_contig97866.23884.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97866.23884.1
Unique NamemRNA_P-canaliculata_contig97866.23884.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig97866.23884.1 vs. uniprot
Match: A0A848U100_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U100_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 2.370e-21
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 ETGLD--WESPSARTRVVRFGASSCLASVLSQDPEAVAKEFQLSYCGVLIFNWNEYRWPHLLSEDRKVPDLDYIDLPQNCIDELMDYHITMQTSWLYRYQTA 300
            +TG +  W SP ART+V+R G+S  + SVL Q P AV+ EF++ + GV +F+W EYRWP+L   D        I+LP +C+ EL+ +H+   T+WL RY+  
Sbjct:   45 QTGYECGWISPDARTQVIRHGSSVAMHSVLQQVPGAVSAEFEVIHDGVKVFSWCEYRWPNLQPGDALRYPSGEIELPVDCLSELLQFHVEHHTAWLARYRAV 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97866.23884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848U100_9GAMM2.370e-2143.14Uncharacterized protein n=1 Tax=Granulosicoccus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97866contigP-canaliculata_contig97866:50..358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.2053885-CDS-P-canaliculata_contig97866:49..3581622817341.2053885-CDS-P-canaliculata_contig97866:49..358Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97866 50..358 +
1693495234.2786143-CDS-P-canaliculata_contig97866:49..3581693495234.2786143-CDS-P-canaliculata_contig97866:49..358Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97866 50..358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97866.23884.1prot_P-canaliculata_contig97866.23884.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97866 50..358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97866.23884.1

>prot_P-canaliculata_contig97866.23884.1 ID=prot_P-canaliculata_contig97866.23884.1|Name=mRNA_P-canaliculata_contig97866.23884.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
ETGLDWESPSARTRVVRFGASSCLASVLSQDPEAVAKEFQLSYCGVLIFN
WNEYRWPHLLSEDRKVPDLDYIDLPQNCIDELMDYHITMQTSWLYRYQTA
IGD
back to top

mRNA from alignment at P-canaliculata_contig97866:50..358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97866.23884.1 ID=mRNA_P-canaliculata_contig97866.23884.1|Name=mRNA_P-canaliculata_contig97866.23884.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at P-canaliculata_contig97866:50..358+ (Pelvetia canaliculata dioecious)
GAAACGGGTTTGGATTGGGAATCACCCAGCGCGAGAACGAGAGTTGTACG
CTTTGGTGCAAGCAGTTGCCTTGCCAGCGTACTTTCTCAAGATCCTGAGG
CCGTAGCGAAAGAGTTTCAATTGAGCTACTGCGGTGTGCTGATATTTAAC
TGGAATGAATACAGGTGGCCACACTTGCTGTCAGAGGATAGAAAAGTACC
TGATCTGGATTACATAGACCTGCCACAAAACTGTATTGACGAGTTGATGG
ACTATCACATCACTATGCAAACAAGTTGGTTATACAGATATCAGACTGCA
ATCGGCGAT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig97866:50..358+

>mRNA_P-canaliculata_contig97866.23884.1 ID=mRNA_P-canaliculata_contig97866.23884.1|Name=mRNA_P-canaliculata_contig97866.23884.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig97866:50..358+ (Pelvetia canaliculata dioecious)
GAAACGGGTTTGGATTGGGAATCACCCAGCGCGAGAACGAGAGTTGTACG
CTTTGGTGCAAGCAGTTGCCTTGCCAGCGTACTTTCTCAAGATCCTGAGG
CCGTAGCGAAAGAGTTTCAATTGAGCTACTGCGGTGTGCTGATATTTAAC
TGGAATGAATACAGGTGGCCACACTTGCTGTCAGAGGATAGAAAAGTACC
TGATCTGGATTACATAGACCTGCCACAAAACTGTATTGACGAGTTGATGG
ACTATCACATCACTATGCAAACAAGTTGGTTATACAGATATCAGACTGCA
ATCGGCGATGAAACGGGTTTGGATTGGGAATCACCCAGCGCGAGAACGAG
AGTTGTACGCTTTGGTGCAAGCAGTTGCCTTGCCAGCGTACTTTCTCAAG
ATCCTGAGGCCGTAGCGAAAGAGTTTCAATTGAGCTACTGCGGTGTGCTG
ATATTTAACTGGAATGAATACAGGTGGCCACACTTGCTGTCAGAGGATAG
AAAAGTACCTGATCTGGATTACATAGACCTGCCACAAAACTGTATTGACG
AGTTGATGGACTATCACATCACTATGCAAACAAGTTGGTTATACAGATAT
CAGACTGCAATCGGCGAT
back to top