mRNA_P-canaliculata_contig9773.23874.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9773.23874.1
Unique NamemRNA_P-canaliculata_contig9773.23874.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9773.23874.1 vs. uniprot
Match: D7G585_ECTSI (MCU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G585_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.570e-38
Identity = 129/325 (39.69%), Postives = 179/325 (55.08%), Query Frame = 1 
Query:  364 RDEMCLRARKIVRQETAETGAELDALSAQVEKLKRAMKDEHSYRKAAERRCRQARDTSSRISRYLDNILRVNEELVMRRTKTSIPPRSAGQ---RSTPTQERGGQDKPERANGPKNSPLGRRECGTLGELHLGAAVEDALRAGRARGDPIPFLEALYERIGFSVMQRE-GEASGTHSLPTSPSRDXXXXXXXXXXXXXXXXQDEREGPYNVKIVVSGGDDGFFLREGMDRNLLAGAQSASRLKET----KRTVRG--EDGVGNRIREGRSPSKPGYSFARSPHRRAVSSAERSPMMLRRLEDLVTQLKRERVDVEQGYKTVVQRA 1308
            R + C RARK  R+ETA   ++L +L+ ++EKL+R + DE + R++AE +  +A+ T+ RISRYLD+IL VN+ELV   T +S+ P +AGQ   R+    +R    +   A   +N  L   + G    + + AAV++A   GR  GDP+P L ALYERIGFS MQ E G   GT SLPTSP R                  D+ E     ++V      GFF  +  D  +L  ++  +   +      R+  G    G GN    G   +K GYSFA SP  R  S+AERSP +++RLE L +QL+RER DVEQ YK VV R+
Sbjct:    9 RKDRCSRARKTARRETAAADSQLTSLARRLEKLQRTLDDERASRQSAELKHHRAKSTTIRISRYLDSILNVNQELVAAGTSSSLTP-TAGQPVPRALGELQRKQSIRDSYATPRRNPAL--EDDG----IDIRAAVKEAYCVGRTGGDPVPSLTALYERIGFSAMQGEDGHHGGTPSLPTSPRR---ARVGNTAEAYRFRDVDDGEDYGRQRLVEPTAVGGFFAED--DAEVLESSRRQASAHQVDDGGSRSANGGKHHGTGNAFVGGGVTAK-GYSFANSPLVRPTSAAERSPEVMKRLEALASQLERERSDVEQWYKDVVHRS 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9773.23874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G585_ECTSI1.570e-3839.69MCU domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9773contigP-canaliculata_contig9773:4633..6855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue7.8e-37
Seed eggNOG ortholog2880.D7G585
Preferred nameCCDC109B
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K14831,ko:K20858
KEGG TC1.A.77.1
KEGG ReactionR05000,R05616,R07273
KEGG Pathwayko00130,ko01100,ko01110,ko04020,ko04218,ko04621,map00130,map01100,map01110,map04020,map04218,map04621
KEGG ModuleM00128
GOsGO:0002009,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005246,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007610,GO:0007611,GO:0007613,GO:0007615,GO:0008016,GO:0008150,GO:0008200,GO:0008324,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009987,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015085,GO:0015267,GO:0015291,GO:0015292,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0019222,GO:0019722,GO:0019725,GO:0019855,GO:0019866,GO:0019932,GO:0022607,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030029,GO:0030036,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033500,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035556,GO:0036444,GO:0042592,GO:0042593,GO:0042802,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044057,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046873,GO:0046883,GO:0046887,GO:0048518,GO:0048522,GO:0048583,GO:0048598,GO:0048729,GO:0048856,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051560,GO:0051561,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060026,GO:0060027,GO:0060401,GO:0060429,GO:0061041,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070509,GO:0070588,GO:0070838,GO:0071840,GO:0072375,GO:0072503,GO:0072507,GO:0072511,GO:0080134,GO:0090087,GO:0090276,GO:0090277,GO:0097435,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:0099106,GO:1902495,GO:1903034,GO:1903426,GO:1903522,GO:1903530,GO:1903532,GO:1904951,GO:1990246,GO:1990351,GO:1990542,GO:2000377
EggNOG free text desc.uniporter activity
EggNOG OGsKOG2966@1,KOG2966@2759
EC2.5.1.39
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko02000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006605.1
Exons5
Model size1392
Cds size1392
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9773.23874.1prot_P-canaliculata_contig9773.23874.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9773 4633..6855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.2436264-CDS-P-canaliculata_contig9773:4632..47191622817340.2436264-CDS-P-canaliculata_contig9773:4632..4719Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 4633..4719 -
1693495233.6272917-CDS-P-canaliculata_contig9773:4632..47191693495233.6272917-CDS-P-canaliculata_contig9773:4632..4719Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 4633..4719 -
1622817340.2581587-CDS-P-canaliculata_contig9773:4998..58471622817340.2581587-CDS-P-canaliculata_contig9773:4998..5847Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 4999..5847 -
1693495233.643673-CDS-P-canaliculata_contig9773:4998..58471693495233.643673-CDS-P-canaliculata_contig9773:4998..5847Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 4999..5847 -
1622817340.2722588-CDS-P-canaliculata_contig9773:6022..61241622817340.2722588-CDS-P-canaliculata_contig9773:6022..6124Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 6023..6124 -
1693495233.659867-CDS-P-canaliculata_contig9773:6022..61241693495233.659867-CDS-P-canaliculata_contig9773:6022..6124Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 6023..6124 -
1622817340.2861316-CDS-P-canaliculata_contig9773:6322..64811622817340.2861316-CDS-P-canaliculata_contig9773:6322..6481Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 6323..6481 -
1693495233.6722348-CDS-P-canaliculata_contig9773:6322..64811693495233.6722348-CDS-P-canaliculata_contig9773:6322..6481Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 6323..6481 -
1622817340.3037791-CDS-P-canaliculata_contig9773:6660..68551622817340.3037791-CDS-P-canaliculata_contig9773:6660..6855Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 6661..6855 -
1693495233.6836607-CDS-P-canaliculata_contig9773:6660..68551693495233.6836607-CDS-P-canaliculata_contig9773:6660..6855Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9773 6661..6855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9773.23874.1

>prot_P-canaliculata_contig9773.23874.1 ID=prot_P-canaliculata_contig9773.23874.1|Name=mRNA_P-canaliculata_contig9773.23874.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=464bp
ERRQSIDEVHSLRTDLARRHEDLKYTQEVQTLTEQDQANAVRLSHEQLLA
DKRRVDLRLEETEASEIIQDLKKTCKNARDRAQDAHVSQWAAEAKLSVLD
RRIEGIEKRARIFLYAFFVRTRDEMCLRARKIVRQETAETGAELDALSAQ
VEKLKRAMKDEHSYRKAAERRCRQARDTSSRISRYLDNILRVNEELVMRR
TKTSIPPRSAGQRSTPTQERGGQDKPERANGPKNSPLGRRECGTLGELHL
GAAVEDALRAGRARGDPIPFLEALYERIGFSVMQREGEASGTHSLPTSPS
RDRERDRGREKDRERARSQDEREGPYNVKIVVSGGDDGFFLREGMDRNLL
AGAQSASRLKETKRTVRGEDGVGNRIREGRSPSKPGYSFARSPHRRAVSS
AERSPMMLRRLEDLVTQLKRERVDVEQGYKTVVQRASSSAYWSVEGPDLN
FRNLTRAIACLQVK
back to top

mRNA from alignment at P-canaliculata_contig9773:4633..6855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9773.23874.1 ID=mRNA_P-canaliculata_contig9773.23874.1|Name=mRNA_P-canaliculata_contig9773.23874.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2223bp|location=Sequence derived from alignment at P-canaliculata_contig9773:4633..6855- (Pelvetia canaliculata dioecious)
GAACGCAGGCAATCGATCGACGAAGTTCACTCGCTCAGGACTGACCTCGC
TCGGCGCCATGAAGACTTGAAATACACACAAGAGGTTCAAACTCTCACTG
AGCAAGACCAAGCCAACGCTGTTCGGCTTTCCCATGAGCAACTGTTAGCT
GACAAACGGAGAGTAGATCTACGCCTTGAGGAAACCGAGGCGAGTGTACT
GAATCGAATTGACCGGGTGGACGAAAATCTAGCTCCAAAGTGTCGGTACA
GGTACGCCGGCAAGTTAAATACTGTTGTATACCGCTGCAACGTTGTTCTG
AACAAAGCGCCGTTGTAAATCAATCGTTCCTCGAGGTTTCTTCGCGCTTT
ATGTCTCTCCAATGATCTGGACAGGAAATCATACAAGATCTCAAGAAAAC
ATGCAAAAACGCGCGCGATCGTGCTCAAGATGCACACGTGTCGCAATGGG
CGGCGGAGGCGAAGCTTTCTGTTCTTGATCGGCGTATCGAAGGAATCGAA
AAGAGGGCACGTATTTTTTTATACGCTTTTTTTGTTTTTTATACCTCTGA
CGCTTACGGGTAAACGGATTTATGTTACAAGCAAGCAGTTAATGAGTTAA
GGAACAGACCTTATCCTTTGCAGGGTGTTTCTACTGTACATGGCGCAGAA
GAGTGCCGGGATGGAATAGGCTAGGTTGCTGTTTGCGATTGGTGTAGGCT
CAAGTACTTTTGCCTTGACCGCCTGGTACAGGTCCGAACACGGGACGAGA
TGTGCTTACGAGCCCGGAAAATTGTTCGTCAGGAGACCGCAGAGACTGGA
GCTGAGTTGGATGCTTTGTCGGCCCAGGTTGAGGTAAGGGGGTGAGAGTC
TACTTCGAAAGCATTCACCGGTGTGACTGCAATGGGGAAATGCCAACAAT
ATCTTACTCAATCACATAGTGCAGCCACTGTCAATATTCCCCCCTCCATC
CCATCCCCGACATGGATCTGCCGTTATTGACTGCGCTACTATCTTTGATA
TGAAAAAGAAACTCAAGCGTGCCATGAAGGACGAGCATTCGTATAGGAAA
GCGGCCGAGCGACGGTGCCGACAAGCTCGAGATACCAGCTCTCGAATCAG
CCGGTACCTCGACAACATACTACGAGTAAACGAGGAACTCGTGATGAGAA
GAACGAAAACATCTATACCGCCGCGCTCGGCGGGACAACGATCCACACCA
ACGCAAGAAAGAGGAGGGCAAGATAAGCCAGAACGAGCCAATGGCCCTAA
AAACAGTCCGTTAGGCCGACGCGAGTGCGGAACCTTAGGGGAACTTCACC
TGGGTGCAGCCGTTGAAGATGCGTTGAGAGCGGGCAGAGCCAGGGGCGAC
CCTATTCCTTTCCTTGAGGCACTTTATGAACGTATCGGTTTCTCTGTGAT
GCAGCGAGAGGGTGAGGCTAGTGGCACCCACAGCCTACCGACAAGCCCCA
GCAGAGACAGAGAGCGAGACAGAGGTAGAGAGAAAGACAGAGAGAGGGCG
AGGTCTCAAGACGAAAGGGAGGGTCCCTACAACGTCAAGATCGTGGTGTC
TGGGGGTGATGATGGGTTCTTCCTGCGTGAAGGCATGGACCGGAATCTGC
TGGCAGGGGCGCAATCCGCGAGCCGACTCAAAGAGACCAAGCGAACGGTA
AGGGGTGAAGATGGAGTTGGGAACAGGATACGGGAAGGGAGAAGCCCGAG
CAAGCCCGGTTATTCGTTTGCGCGTTCGCCCCACAGGAGGGCGGTGTCTA
GCGCAGAGCGGTCGCCCATGATGTTAAGACGGCTGGAAGATTTGGTGACA
CAACTAAAGAGGGAAAGGGTGGACGTCGAACAGGGGTACAAGACTGTGGT
GCAAAGGGTGAGTACCACCGGCGGTCTGCATCACGTTCTAGGATGCAGTC
TTCCTATATTTCGACTTGAATTTACTCTATGATAATATCAGACCTTGTTG
CCTTCTACGCGTTACACGGCGAACCAGCGGCAAACGCGTTAGACTGGCTC
TATCATGCTGCATCGACATGCTTTAAAATGCAGCGGTGCGCAATCCGTAT
TAGCGGCCAGGGCTGGACCCACAGGTCAGCCTGTGTGATACCGTGATCTT
ACTCTCATGGGCCGCCGTGGTCCGTCCACATCGTAGGCCAGCTCTAGTGC
CTACTGGAGTGTGGAGGGCCCGGATTTGAATTTCAGGAACCTCACGAGAG
CCATCGCCTGCCTTCAGGTGAAA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9773:4633..6855-

>mRNA_P-canaliculata_contig9773.23874.1 ID=mRNA_P-canaliculata_contig9773.23874.1|Name=mRNA_P-canaliculata_contig9773.23874.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2784bp|location=Sequence derived from alignment at P-canaliculata_contig9773:4633..6855- (Pelvetia canaliculata dioecious)
GAACGCAGGCAATCGATCGACGAAGTTCACTCGCTCAGGACTGACCTCGC
TCGGCGCCATGAAGACTTGAAATACACACAAGAGGTTCAAACTCTCACTG
AGCAAGACCAAGCCAACGCTGTTCGGCTTTCCCATGAGCAACTGTTAGCT
GACAAACGGAGAGTAGATCTACGCCTTGAGGAAACCGAGGCGAGTGAACG
CAGGCAATCGATCGACGAAGTTCACTCGCTCAGGACTGACCTCGCTCGGC
GCCATGAAGACTTGAAATACACACAAGAGGTTCAAACTCTCACTGAGCAA
GACCAAGCCAACGCTGTTCGGCTTTCCCATGAGCAACTGTTAGCTGACAA
ACGGAGAGTAGATCTACGCCTTGAGGAAACCGAGGCGAGTGAAATCATAC
AAGATCTCAAGAAAACATGCAAAAACGCGCGCGATCGTGCTCAAGATGCA
CACGTGTCGCAATGGGCGGCGGAGGCGAAGCTTTCTGTTCTTGATCGGCG
TATCGAAGGAATCGAAAAGAGGGCACGTATTTTTTTATACGCTTTTTTTG
AAATCATACAAGATCTCAAGAAAACATGCAAAAACGCGCGCGATCGTGCT
CAAGATGCACACGTGTCGCAATGGGCGGCGGAGGCGAAGCTTTCTGTTCT
TGATCGGCGTATCGAAGGAATCGAAAAGAGGGCACGTATTTTTTTATACG
CTTTTTTTGTCCGAACACGGGACGAGATGTGCTTACGAGCCCGGAAAATT
GTTCGTCAGGAGACCGCAGAGACTGGAGCTGAGTTGGATGCTTTGTCGGC
CCAGGTTGAGGTCCGAACACGGGACGAGATGTGCTTACGAGCCCGGAAAA
TTGTTCGTCAGGAGACCGCAGAGACTGGAGCTGAGTTGGATGCTTTGTCG
GCCCAGGTTGAGAAACTCAAGCGTGCCATGAAGGACGAGCATTCGTATAG
GAAAGCGGCCGAGCGACGGTGCCGACAAGCTCGAGATACCAGCTCTCGAA
TCAGCCGGTACCTCGACAACATACTACGAGTAAACGAGGAACTCGTGATG
AGAAGAACGAAAACATCTATACCGCCGCGCTCGGCGGGACAACGATCCAC
ACCAACGCAAGAAAGAGGAGGGCAAGATAAGCCAGAACGAGCCAATGGCC
CTAAAAACAGTCCGTTAGGCCGACGCGAGTGCGGAACCTTAGGGGAACTT
CACCTGGGTGCAGCCGTTGAAGATGCGTTGAGAGCGGGCAGAGCCAGGGG
CGACCCTATTCCTTTCCTTGAGGCACTTTATGAACGTATCGGTTTCTCTG
TGATGCAGCGAGAGGGTGAGGCTAGTGGCACCCACAGCCTACCGACAAGC
CCCAGCAGAGACAGAGAGCGAGACAGAGGTAGAGAGAAAGACAGAGAGAG
GGCGAGGTCTCAAGACGAAAGGGAGGGTCCCTACAACGTCAAGATCGTGG
TGTCTGGGGGTGATGATGGGTTCTTCCTGCGTGAAGGCATGGACCGGAAT
CTGCTGGCAGGGGCGCAATCCGCGAGCCGACTCAAAGAGACCAAGCGAAC
GGTAAGGGGTGAAGATGGAGTTGGGAACAGGATACGGGAAGGGAGAAGCC
CGAGCAAGCCCGGTTATTCGTTTGCGCGTTCGCCCCACAGGAGGGCGGTG
TCTAGCGCAGAGCGGTCGCCCATGATGTTAAGACGGCTGGAAGATTTGGT
GACACAACTAAAGAGGGAAAGGGTGGACGTCGAACAGGGGTACAAGACTG
TGGTGCAAAGGAAACTCAAGCGTGCCATGAAGGACGAGCATTCGTATAGG
AAAGCGGCCGAGCGACGGTGCCGACAAGCTCGAGATACCAGCTCTCGAAT
CAGCCGGTACCTCGACAACATACTACGAGTAAACGAGGAACTCGTGATGA
GAAGAACGAAAACATCTATACCGCCGCGCTCGGCGGGACAACGATCCACA
CCAACGCAAGAAAGAGGAGGGCAAGATAAGCCAGAACGAGCCAATGGCCC
TAAAAACAGTCCGTTAGGCCGACGCGAGTGCGGAACCTTAGGGGAACTTC
ACCTGGGTGCAGCCGTTGAAGATGCGTTGAGAGCGGGCAGAGCCAGGGGC
GACCCTATTCCTTTCCTTGAGGCACTTTATGAACGTATCGGTTTCTCTGT
GATGCAGCGAGAGGGTGAGGCTAGTGGCACCCACAGCCTACCGACAAGCC
CCAGCAGAGACAGAGAGCGAGACAGAGGTAGAGAGAAAGACAGAGAGAGG
GCGAGGTCTCAAGACGAAAGGGAGGGTCCCTACAACGTCAAGATCGTGGT
GTCTGGGGGTGATGATGGGTTCTTCCTGCGTGAAGGCATGGACCGGAATC
TGCTGGCAGGGGCGCAATCCGCGAGCCGACTCAAAGAGACCAAGCGAACG
GTAAGGGGTGAAGATGGAGTTGGGAACAGGATACGGGAAGGGAGAAGCCC
GAGCAAGCCCGGTTATTCGTTTGCGCGTTCGCCCCACAGGAGGGCGGTGT
CTAGCGCAGAGCGGTCGCCCATGATGTTAAGACGGCTGGAAGATTTGGTG
ACACAACTAAAGAGGGAAAGGGTGGACGTCGAACAGGGGTACAAGACTGT
GGTGCAAAGGGCCAGCTCTAGTGCCTACTGGAGTGTGGAGGGCCCGGATT
TGAATTTCAGGAACCTCACGAGAGCCATCGCCTGCCTTCAGGTGAAAGCC
AGCTCTAGTGCCTACTGGAGTGTGGAGGGCCCGGATTTGAATTTCAGGAA
CCTCACGAGAGCCATCGCCTGCCTTCAGGTGAAA
back to top