mRNA_P-canaliculata_contig9759.23853.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9759.23853.1
Unique NamemRNA_P-canaliculata_contig9759.23853.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9759.23853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9759contigP-canaliculata_contig9759:995..1532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size434
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9759.23853.1prot_P-canaliculata_contig9759.23853.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9759 996..1532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.843977-UTR-P-canaliculata_contig9759:994..9951622817338.843977-UTR-P-canaliculata_contig9759:994..995Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9759 995..995 +
1693495232.6841943-UTR-P-canaliculata_contig9759:994..9951693495232.6841943-UTR-P-canaliculata_contig9759:994..995Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9759 995..995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.858204-CDS-P-canaliculata_contig9759:995..10821622817338.858204-CDS-P-canaliculata_contig9759:995..1082Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 996..1082 +
1693495232.7015903-CDS-P-canaliculata_contig9759:995..10821693495232.7015903-CDS-P-canaliculata_contig9759:995..1082Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 996..1082 +
1622817338.8693988-CDS-P-canaliculata_contig9759:1131..12061622817338.8693988-CDS-P-canaliculata_contig9759:1131..1206Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 1132..1206 +
1693495232.716202-CDS-P-canaliculata_contig9759:1131..12061693495232.716202-CDS-P-canaliculata_contig9759:1131..1206Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 1132..1206 +
1622817338.8805432-CDS-P-canaliculata_contig9759:1262..15321622817338.8805432-CDS-P-canaliculata_contig9759:1262..1532Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 1263..1532 +
1693495232.7276897-CDS-P-canaliculata_contig9759:1262..15321693495232.7276897-CDS-P-canaliculata_contig9759:1262..1532Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9759 1263..1532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9759.23853.1

>prot_P-canaliculata_contig9759.23853.1 ID=prot_P-canaliculata_contig9759.23853.1|Name=mRNA_P-canaliculata_contig9759.23853.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MKLLALLPILPISAQILSDLQNFGEGVQDALSAGADVVGEIITVITSVGD
GVQTRLETVTVNSEATTTTLTTSVDGSLTTVTSIVSVTETSTATSGEEAS
TVTVTASGNGETGVSTVLVLAGQVVSTANAAQSTETTGDAQSTE
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mRNA from alignment at P-canaliculata_contig9759:995..1532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9759.23853.1 ID=mRNA_P-canaliculata_contig9759.23853.1|Name=mRNA_P-canaliculata_contig9759.23853.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=538bp|location=Sequence derived from alignment at P-canaliculata_contig9759:995..1532+ (Pelvetia canaliculata dioecious)
CATGAAACTCCTCGCTCTCCTCCCCATCCTCCCCATCTCGGCGCAAATCC
TCTCCGACCTCCAAAACTTCGGCGAAGGCGTGCAAGATGTGCGTGTCCCC
CCTCACGCCTGGAGGCGGTACTGACACCATTGACCAGGCCCTCAGCGCCG
GCGCCGATGTGGTCGGCGAAATCATCACCGTCATCACTAGCGTCGGCGAC
GGCGTCCAAACTGTGCGTCCCCTCGTCCGATGACTTCCCACCCGATGGTC
CTTGCTGACGGACCCCAGCGCCTCGAAACCGTGACCGTCAACTCCGAAGC
CACCACCACCACTCTCACCACCTCTGTCGACGGCAGCCTCACCACCGTGA
CCTCCATCGTGAGCGTCACCGAGACCTCGACCGCAACATCCGGCGAGGAG
GCCTCCACCGTGACGGTCACGGCCAGCGGCAACGGCGAGACCGGCGTGTC
GACTGTGCTGGTACTGGCGGGACAGGTGGTGTCGACGGCGAACGCGGCGC
AGAGCACGGAGACGACGGGCGACGCGCAGAGTACGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9759:995..1532+

>mRNA_P-canaliculata_contig9759.23853.1 ID=mRNA_P-canaliculata_contig9759.23853.1|Name=mRNA_P-canaliculata_contig9759.23853.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig9759:995..1532+ (Pelvetia canaliculata dioecious)
ATGAAACTCCTCGCTCTCCTCCCCATCCTCCCCATCTCGGCGCAAATCCT
CTCCGACCTCCAAAACTTCGGCGAAGGCGTGCAAGATATGAAACTCCTCG
CTCTCCTCCCCATCCTCCCCATCTCGGCGCAAATCCTCTCCGACCTCCAA
AACTTCGGCGAAGGCGTGCAAGATGCCCTCAGCGCCGGCGCCGATGTGGT
CGGCGAAATCATCACCGTCATCACTAGCGTCGGCGACGGCGTCCAAACTG
CCCTCAGCGCCGGCGCCGATGTGGTCGGCGAAATCATCACCGTCATCACT
AGCGTCGGCGACGGCGTCCAAACTCGCCTCGAAACCGTGACCGTCAACTC
CGAAGCCACCACCACCACTCTCACCACCTCTGTCGACGGCAGCCTCACCA
CCGTGACCTCCATCGTGAGCGTCACCGAGACCTCGACCGCAACATCCGGC
GAGGAGGCCTCCACCGTGACGGTCACGGCCAGCGGCAACGGCGAGACCGG
CGTGTCGACTGTGCTGGTACTGGCGGGACAGGTGGTGTCGACGGCGAACG
CGGCGCAGAGCACGGAGACGACGGGCGACGCGCAGAGTACGGAGCGCCTC
GAAACCGTGACCGTCAACTCCGAAGCCACCACCACCACTCTCACCACCTC
TGTCGACGGCAGCCTCACCACCGTGACCTCCATCGTGAGCGTCACCGAGA
CCTCGACCGCAACATCCGGCGAGGAGGCCTCCACCGTGACGGTCACGGCC
AGCGGCAACGGCGAGACCGGCGTGTCGACTGTGCTGGTACTGGCGGGACA
GGTGGTGTCGACGGCGAACGCGGCGCAGAGCACGGAGACGACGGGCGACG
CGCAGAGTACGGAG
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