mRNA_P-canaliculata_contig9735.23822.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9735.23822.1
Unique NamemRNA_P-canaliculata_contig9735.23822.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9735.23822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9735contigP-canaliculata_contig9735:10407..10873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9735.23822.1prot_P-canaliculata_contig9735.23822.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9735 10407..10795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.0736217-CDS-P-canaliculata_contig9735:10406..106621622817337.0736217-CDS-P-canaliculata_contig9735:10406..10662Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 10407..10662 -
1693495231.71115-CDS-P-canaliculata_contig9735:10406..106621693495231.71115-CDS-P-canaliculata_contig9735:10406..10662Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 10407..10662 -
1622817337.08775-CDS-P-canaliculata_contig9735:10721..107951622817337.08775-CDS-P-canaliculata_contig9735:10721..10795Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 10722..10795 -
1693495231.7262568-CDS-P-canaliculata_contig9735:10721..107951693495231.7262568-CDS-P-canaliculata_contig9735:10721..10795Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 10722..10795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.0989065-UTR-P-canaliculata_contig9735:10795..108731622817337.0989065-UTR-P-canaliculata_contig9735:10795..10873Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9735 10796..10873 -
1693495231.736046-UTR-P-canaliculata_contig9735:10795..108731693495231.736046-UTR-P-canaliculata_contig9735:10795..10873Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9735 10796..10873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9735.23822.1

>prot_P-canaliculata_contig9735.23822.1 ID=prot_P-canaliculata_contig9735.23822.1|Name=mRNA_P-canaliculata_contig9735.23822.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=110bp
MTCLPSPEVLPQQMVDAQNPKINASNKNNFARAQNRSPRPKYFWCQADAP
TACSGTVHSLWPEGDISLILTPSRRKKGAYERLGIFHQTARKFQRCADGL
LRHRPFALA*
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mRNA from alignment at P-canaliculata_contig9735:10407..10873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9735.23822.1 ID=mRNA_P-canaliculata_contig9735.23822.1|Name=mRNA_P-canaliculata_contig9735.23822.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=467bp|location=Sequence derived from alignment at P-canaliculata_contig9735:10407..10873- (Pelvetia canaliculata dioecious)
CAATTTCATCCTTCTTGACTTCACCAACACAACACACGAAGTGGACCATG
GCGAAGGCCATTTGCCTCATGGGTGCGGATGACATGTTTACCCTCTCCGG
AAGTCCTTCCTCAACAGATGGTGGACGCCCAGAACCCGAAGATCAACGCC
AGGTACGTCGTACACCGAATGCAATCGTGCCACTCTGCATTGTCCGACTG
ACACACCACAGCAACAAGAACAATTTTGCTCGAGCTCAGAATCGCTCGCC
TCGCCCGAAATACTTCTGGTGCCAAGCAGATGCGCCGACGGCTTGCTCCG
GCACTGTCCATTCGCTCTGGCCTGAGGGAGACATCTCTCTCATTCTTACG
CCGTCCCGCCGGAAGAAGGGGGCGTATGAGAGACTGGGAATTTTCCACCA
AACCGCCCGAAAATTCCAAAGATGCGCCGACGGCTTGCTCCGGCACCGTC
CATTCGCTCTGGCCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9735:10407..10873-

>mRNA_P-canaliculata_contig9735.23822.1 ID=mRNA_P-canaliculata_contig9735.23822.1|Name=mRNA_P-canaliculata_contig9735.23822.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at P-canaliculata_contig9735:10407..10873- (Pelvetia canaliculata dioecious)
ATGACATGTTTACCCTCTCCGGAAGTCCTTCCTCAACAGATGGTGGACGC
CCAGAACCCGAAGATCAACGCCAGATGACATGTTTACCCTCTCCGGAAGT
CCTTCCTCAACAGATGGTGGACGCCCAGAACCCGAAGATCAACGCCAGCA
ACAAGAACAATTTTGCTCGAGCTCAGAATCGCTCGCCTCGCCCGAAATAC
TTCTGGTGCCAAGCAGATGCGCCGACGGCTTGCTCCGGCACTGTCCATTC
GCTCTGGCCTGAGGGAGACATCTCTCTCATTCTTACGCCGTCCCGCCGGA
AGAAGGGGGCGTATGAGAGACTGGGAATTTTCCACCAAACCGCCCGAAAA
TTCCAAAGATGCGCCGACGGCTTGCTCCGGCACCGTCCATTCGCTCTGGC
CTGACAACAAGAACAATTTTGCTCGAGCTCAGAATCGCTCGCCTCGCCCG
AAATACTTCTGGTGCCAAGCAGATGCGCCGACGGCTTGCTCCGGCACTGT
CCATTCGCTCTGGCCTGAGGGAGACATCTCTCTCATTCTTACGCCGTCCC
GCCGGAAGAAGGGGGCGTATGAGAGACTGGGAATTTTCCACCAAACCGCC
CGAAAATTCCAAAGATGCGCCGACGGCTTGCTCCGGCACCGTCCATTCGC
TCTGGCCTGA
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