mRNA_P-canaliculata_contig97318.23815.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97318.23815.1
Unique NamemRNA_P-canaliculata_contig97318.23815.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97318.23815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97318contigP-canaliculata_contig97318:96..332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size238
Cds size234
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.867285-UTR-P-canaliculata_contig97318:95..981622817336.867285-UTR-P-canaliculata_contig97318:95..98Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97318 96..98 +
1693495231.5333085-UTR-P-canaliculata_contig97318:95..981693495231.5333085-UTR-P-canaliculata_contig97318:95..98Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97318 96..98 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.8817406-CDS-P-canaliculata_contig97318:98..3321622817336.8817406-CDS-P-canaliculata_contig97318:98..332Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97318 99..332 +
1693495231.5451021-CDS-P-canaliculata_contig97318:98..3321693495231.5451021-CDS-P-canaliculata_contig97318:98..332Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97318 99..332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97318.23815.1prot_P-canaliculata_contig97318.23815.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97318 99..332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97318.23815.1

>prot_P-canaliculata_contig97318.23815.1 ID=prot_P-canaliculata_contig97318.23815.1|Name=mRNA_P-canaliculata_contig97318.23815.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=78bp
MRPPPPGRETITIGDRRRINVECIGTMDVIFHGKSDQRITLIDVAYVPDL
GFNLYSLHAVQRTHLIVSDASGTHIIGA
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mRNA from alignment at P-canaliculata_contig97318:96..332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97318.23815.1 ID=mRNA_P-canaliculata_contig97318.23815.1|Name=mRNA_P-canaliculata_contig97318.23815.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at P-canaliculata_contig97318:96..332+ (Pelvetia canaliculata dioecious)
AACATGAGGCCCCCTCCGCCCGGTCGCGAAACCATCACGATCGGGGACCG
TCGGAGAATTAACGTAGAGTGTATCGGGACTATGGATGTCATTTTCCACG
GGAAGAGTGACCAGAGGATTACCTTGATTGATGTCGCATACGTTCCAGAC
CTAGGTTTTAACCTGTACTCGCTGCACGCCGTCCAAAGAACACATCTGAT
AGTGTCGGACGCCTCTGGAACCCACATTATAGGAGCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig97318:96..332+

>mRNA_P-canaliculata_contig97318.23815.1 ID=mRNA_P-canaliculata_contig97318.23815.1|Name=mRNA_P-canaliculata_contig97318.23815.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at P-canaliculata_contig97318:96..332+ (Pelvetia canaliculata dioecious)
ATGAGGCCCCCTCCGCCCGGTCGCGAAACCATCACGATCGGGGACCGTCG
GAGAATTAACGTAGAGTGTATCGGGACTATGGATGTCATTTTCCACGGGA
AGAGTGACCAGAGGATTACCTTGATTGATGTCGCATACGTTCCAGACCTA
GGTTTTAACCTGTACTCGCTGCACGCCGTCCAAAGAACACATCTGATAGT
GTCGGACGCCTCTGGAACCCACATTATAGGAGCAATGAGGCCCCCTCCGC
CCGGTCGCGAAACCATCACGATCGGGGACCGTCGGAGAATTAACGTAGAG
TGTATCGGGACTATGGATGTCATTTTCCACGGGAAGAGTGACCAGAGGAT
TACCTTGATTGATGTCGCATACGTTCCAGACCTAGGTTTTAACCTGTACT
CGCTGCACGCCGTCCAAAGAACACATCTGATAGTGTCGGACGCCTCTGGA
ACCCACATTATAGGAGCA
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