mRNA_P-canaliculata_contig97.23764.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97.23764.1
Unique NamemRNA_P-canaliculata_contig97.23764.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97.23764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97contigP-canaliculata_contig97:37351..37713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size364
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.4067962-CDS-P-canaliculata_contig97:37350..376801622817331.4067962-CDS-P-canaliculata_contig97:37350..37680Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 37351..37680 +
1693495228.698814-CDS-P-canaliculata_contig97:37350..376801693495228.698814-CDS-P-canaliculata_contig97:37350..37680Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 37351..37680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.4196794-UTR-P-canaliculata_contig97:37680..377131622817331.4196794-UTR-P-canaliculata_contig97:37680..37713Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 37681..37713 +
1693495228.7103934-UTR-P-canaliculata_contig97:37680..377131693495228.7103934-UTR-P-canaliculata_contig97:37680..37713Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 37681..37713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97.23764.1prot_P-canaliculata_contig97.23764.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97 37351..37680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97.23764.1

>prot_P-canaliculata_contig97.23764.1 ID=prot_P-canaliculata_contig97.23764.1|Name=mRNA_P-canaliculata_contig97.23764.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=110bp
EGRQGQAVRSRATFSVLALPLGQASESDGTGSLPACQVRRVLTQTPRYDH
GLLQDLLGETFATPRSGWSSPMDSLWQCRRWSGRDEPACRAAEPVCTKAP
RSHRSTQLG*
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mRNA from alignment at P-canaliculata_contig97:37351..37713+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97.23764.1 ID=mRNA_P-canaliculata_contig97.23764.1|Name=mRNA_P-canaliculata_contig97.23764.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at P-canaliculata_contig97:37351..37713+ (Pelvetia canaliculata dioecious)
GAAGGAAGGCAAGGCCAGGCGGTGCGATCAAGAGCCACATTTTCCGTGCT
CGCGCTGCCTCTAGGTCAAGCCTCGGAGTCGGATGGGACTGGCTCACTGC
CAGCCTGCCAGGTCAGACGGGTGTTAACCCAAACGCCCAGATATGACCAT
GGTCTGTTGCAAGATCTTCTGGGCGAGACATTCGCGACGCCCAGGTCTGG
CTGGTCAAGTCCAATGGACAGCTTGTGGCAATGTCGTCGCTGGAGTGGAA
GGGATGAACCTGCATGCAGAGCTGCAGAGCCAGTGTGCACAAAGGCACCC
AGGTCACATCGTTCGACTCAACTCGGCTAAGACTGGGGACCAGGCTGGCT
TATTGTCCAATCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig97:37351..37713+

>mRNA_P-canaliculata_contig97.23764.1 ID=mRNA_P-canaliculata_contig97.23764.1|Name=mRNA_P-canaliculata_contig97.23764.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at P-canaliculata_contig97:37351..37713+ (Pelvetia canaliculata dioecious)
GAAGGAAGGCAAGGCCAGGCGGTGCGATCAAGAGCCACATTTTCCGTGCT
CGCGCTGCCTCTAGGTCAAGCCTCGGAGTCGGATGGGACTGGCTCACTGC
CAGCCTGCCAGGTCAGACGGGTGTTAACCCAAACGCCCAGATATGACCAT
GGTCTGTTGCAAGATCTTCTGGGCGAGACATTCGCGACGCCCAGGTCTGG
CTGGTCAAGTCCAATGGACAGCTTGTGGCAATGTCGTCGCTGGAGTGGAA
GGGATGAACCTGCATGCAGAGCTGCAGAGCCAGTGTGCACAAAGGCACCC
AGGTCACATCGTTCGACTCAACTCGGCTAAGAAGGAAGGCAAGGCCAGGC
GGTGCGATCAAGAGCCACATTTTCCGTGCTCGCGCTGCCTCTAGGTCAAG
CCTCGGAGTCGGATGGGACTGGCTCACTGCCAGCCTGCCAGGTCAGACGG
GTGTTAACCCAAACGCCCAGATATGACCATGGTCTGTTGCAAGATCTTCT
GGGCGAGACATTCGCGACGCCCAGGTCTGGCTGGTCAAGTCCAATGGACA
GCTTGTGGCAATGTCGTCGCTGGAGTGGAAGGGATGAACCTGCATGCAGA
GCTGCAGAGCCAGTGTGCACAAAGGCACCCAGGTCACATCGTTCGACTCA
ACTCGGCTAA
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