mRNA_P-canaliculata_contig95047.23522.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig95047.23522.1
Unique NamemRNA_P-canaliculata_contig95047.23522.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig95047.23522.1 vs. uniprot
Match: A0A848UAR4_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UAR4_9GAMM)

HSP 1 Score: 161 bits (408), Expect = 5.120e-47
Identity = 77/121 (63.64%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    4 IWTLQHYPSPIDGSALCAVVSTPAIVTNGTIDTQVAVIISNSAVFLRTDATFDTTAAEMGYRIDAGIPIGFDHFLNELTAVVDDGYERLTNTLLAGETLRVTFAYSPQLSSAETHAIEFPL 366
            +W++ ++P+P+DGSALC+VVS P  V NGT++TQV +IIS+SAV LRTDATFD  A E G+R+DAG P+ FDHFLNELTAVVDD Y RL   +  G TL V+FAY PQLS+AETH +EF L
Sbjct:  134 LWSVTNFPNPVDGSALCSVVSRPVTVMNGTLETQVTLIISDSAVILRTDATFDDAAPETGFRVDAGFPVAFDHFLNELTAVVDDSYPRLIEAIENGSTLTVSFAYDPQLSTAETHVMEFSL 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig95047.23522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848UAR4_9GAMM5.120e-4763.64Uncharacterized protein n=1 Tax=Granulosicoccus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig95047contigP-canaliculata_contig95047:342..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817315.474362-CDS-P-canaliculata_contig95047:341..7071622817315.474362-CDS-P-canaliculata_contig95047:341..707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig95047 342..707 +
1693495218.9787047-CDS-P-canaliculata_contig95047:341..7071693495218.9787047-CDS-P-canaliculata_contig95047:341..707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig95047 342..707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig95047.23522.1prot_P-canaliculata_contig95047.23522.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig95047 342..707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig95047.23522.1

>prot_P-canaliculata_contig95047.23522.1 ID=prot_P-canaliculata_contig95047.23522.1|Name=mRNA_P-canaliculata_contig95047.23522.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=122bp
GIWTLQHYPSPIDGSALCAVVSTPAIVTNGTIDTQVAVIISNSAVFLRTD
ATFDTTAAEMGYRIDAGIPIGFDHFLNELTAVVDDGYERLTNTLLAGETL
RVTFAYSPQLSSAETHAIEFPL
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mRNA from alignment at P-canaliculata_contig95047:342..707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig95047.23522.1 ID=mRNA_P-canaliculata_contig95047.23522.1|Name=mRNA_P-canaliculata_contig95047.23522.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at P-canaliculata_contig95047:342..707+ (Pelvetia canaliculata dioecious)
GGCATCTGGACCCTGCAACACTACCCTAGCCCGATAGATGGTTCTGCACT
GTGCGCGGTGGTATCAACTCCCGCCATTGTTACCAACGGTACAATTGACA
CACAGGTAGCGGTCATTATCAGCAATTCGGCTGTGTTTTTAAGAACTGAT
GCCACCTTCGATACAACAGCTGCGGAAATGGGTTACCGAATCGATGCTGG
AATACCGATCGGGTTCGACCATTTCCTGAACGAACTGACTGCGGTGGTCG
ACGACGGCTATGAGAGATTGACAAATACACTGTTAGCAGGTGAGACACTC
AGAGTTACGTTCGCTTACTCTCCACAACTATCCTCAGCCGAGACACACGC
TATCGAATTTCCACTA
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Coding sequence (CDS) from alignment at P-canaliculata_contig95047:342..707+

>mRNA_P-canaliculata_contig95047.23522.1 ID=mRNA_P-canaliculata_contig95047.23522.1|Name=mRNA_P-canaliculata_contig95047.23522.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at P-canaliculata_contig95047:342..707+ (Pelvetia canaliculata dioecious)
GGCATCTGGACCCTGCAACACTACCCTAGCCCGATAGATGGTTCTGCACT
GTGCGCGGTGGTATCAACTCCCGCCATTGTTACCAACGGTACAATTGACA
CACAGGTAGCGGTCATTATCAGCAATTCGGCTGTGTTTTTAAGAACTGAT
GCCACCTTCGATACAACAGCTGCGGAAATGGGTTACCGAATCGATGCTGG
AATACCGATCGGGTTCGACCATTTCCTGAACGAACTGACTGCGGTGGTCG
ACGACGGCTATGAGAGATTGACAAATACACTGTTAGCAGGTGAGACACTC
AGAGTTACGTTCGCTTACTCTCCACAACTATCCTCAGCCGAGACACACGC
TATCGAATTTCCACTAGGCATCTGGACCCTGCAACACTACCCTAGCCCGA
TAGATGGTTCTGCACTGTGCGCGGTGGTATCAACTCCCGCCATTGTTACC
AACGGTACAATTGACACACAGGTAGCGGTCATTATCAGCAATTCGGCTGT
GTTTTTAAGAACTGATGCCACCTTCGATACAACAGCTGCGGAAATGGGTT
ACCGAATCGATGCTGGAATACCGATCGGGTTCGACCATTTCCTGAACGAA
CTGACTGCGGTGGTCGACGACGGCTATGAGAGATTGACAAATACACTGTT
AGCAGGTGAGACACTCAGAGTTACGTTCGCTTACTCTCCACAACTATCCT
CAGCCGAGACACACGCTATCGAATTTCCACTA
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