mRNA_P-canaliculata_contig107592.1000.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig107592.1000.1
Unique NamemRNA_P-canaliculata_contig107592.1000.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107592.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107592contigP-canaliculata_contig107592:173..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size744
Cds size744
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.0469265-CDS-P-canaliculata_contig107592:172..9161622815645.0469265-CDS-P-canaliculata_contig107592:172..916Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107592 173..916 +
1693494184.0062563-CDS-P-canaliculata_contig107592:172..9161693494184.0062563-CDS-P-canaliculata_contig107592:172..916Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107592 173..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107592.1000.1prot_P-canaliculata_contig107592.1000.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig107592 173..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig107592.1000.1

>prot_P-canaliculata_contig107592.1000.1 ID=prot_P-canaliculata_contig107592.1000.1|Name=mRNA_P-canaliculata_contig107592.1000.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=248bp
MIVSRFLLSTAALAAVGLSPAHADVLLSGTYDSATTNANQVDVSATSAAN
PNQLDVAAFSTLVDAAFVAGTGGTITFDATGDIAESLTNPNSSNAVFADG
SVLAEVRRTIVGTGAASGDATRIPISGNLGFGGTQDFGFAFQSADSINAV
GITIISRSGQTAADATVTATFAATDGSGSQTVSQAFELGSSAGGDDTFFG
FAAPTGTFLTGLEIETPYFTRVDDLGITTAVPEPASLGLLAAGGTLLL
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mRNA from alignment at P-canaliculata_contig107592:173..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig107592.1000.1 ID=mRNA_P-canaliculata_contig107592.1000.1|Name=mRNA_P-canaliculata_contig107592.1000.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at P-canaliculata_contig107592:173..916+ (Pelvetia canaliculata dioecious)
ATGATCGTTTCCCGCTTCCTTCTCTCGACCGCCGCCCTCGCCGCGGTCGG
CCTGTCCCCCGCTCACGCGGACGTGCTGCTTTCGGGCACCTACGACAGCG
CAACCACGAATGCGAACCAGGTCGATGTTTCGGCCACGTCCGCTGCCAAC
CCCAACCAGCTCGATGTGGCCGCCTTCTCGACGCTCGTCGACGCCGCGTT
CGTTGCCGGCACCGGAGGGACCATCACCTTTGATGCAACGGGTGACATCG
CCGAATCGCTCACCAACCCGAACAGCTCGAACGCTGTCTTCGCGGACGGG
TCCGTGCTTGCGGAGGTTCGGCGGACGATCGTCGGCACGGGCGCGGCAAG
CGGCGATGCAACGCGGATCCCGATTTCCGGCAACCTCGGCTTCGGTGGGA
CGCAGGATTTTGGCTTCGCCTTCCAGTCCGCGGACTCGATCAACGCCGTG
GGCATCACCATCATCTCCCGCTCCGGGCAGACGGCCGCCGACGCCACCGT
CACGGCCACCTTCGCGGCGACCGATGGCTCGGGGAGTCAGACGGTTTCGC
AGGCGTTCGAGCTCGGGTCGAGCGCCGGTGGCGACGACACGTTCTTCGGC
TTTGCCGCACCGACCGGGACGTTTCTGACCGGCCTGGAGATCGAGACGCC
GTACTTCACGCGGGTCGACGACCTCGGCATCACCACCGCCGTTCCCGAGC
CCGCCTCGCTGGGCCTCCTTGCCGCGGGCGGCACCCTGCTGCTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig107592:173..916+

>mRNA_P-canaliculata_contig107592.1000.1 ID=mRNA_P-canaliculata_contig107592.1000.1|Name=mRNA_P-canaliculata_contig107592.1000.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at P-canaliculata_contig107592:173..916+ (Pelvetia canaliculata dioecious)
ATGATCGTTTCCCGCTTCCTTCTCTCGACCGCCGCCCTCGCCGCGGTCGG
CCTGTCCCCCGCTCACGCGGACGTGCTGCTTTCGGGCACCTACGACAGCG
CAACCACGAATGCGAACCAGGTCGATGTTTCGGCCACGTCCGCTGCCAAC
CCCAACCAGCTCGATGTGGCCGCCTTCTCGACGCTCGTCGACGCCGCGTT
CGTTGCCGGCACCGGAGGGACCATCACCTTTGATGCAACGGGTGACATCG
CCGAATCGCTCACCAACCCGAACAGCTCGAACGCTGTCTTCGCGGACGGG
TCCGTGCTTGCGGAGGTTCGGCGGACGATCGTCGGCACGGGCGCGGCAAG
CGGCGATGCAACGCGGATCCCGATTTCCGGCAACCTCGGCTTCGGTGGGA
CGCAGGATTTTGGCTTCGCCTTCCAGTCCGCGGACTCGATCAACGCCGTG
GGCATCACCATCATCTCCCGCTCCGGGCAGACGGCCGCCGACGCCACCGT
CACGGCCACCTTCGCGGCGACCGATGGCTCGGGGAGTCAGACGGTTTCGC
AGGCGTTCGAGCTCGGGTCGAGCGCCGGTGGCGACGACACGTTCTTCGGC
TTTGCCGCACCGACCGGGACGTTTCTGACCGGCCTGGAGATCGAGACGCC
GTACTTCACGCGGGTCGACGACCTCGGCATCACCACCGCCGTTCCCGAGC
CCGCCTCGCTGGGCCTCCTTGCCGCGGGCGGCACCCTGCTGCTCATGATC
GTTTCCCGCTTCCTTCTCTCGACCGCCGCCCTCGCCGCGGTCGGCCTGTC
CCCCGCTCACGCGGACGTGCTGCTTTCGGGCACCTACGACAGCGCAACCA
CGAATGCGAACCAGGTCGATGTTTCGGCCACGTCCGCTGCCAACCCCAAC
CAGCTCGATGTGGCCGCCTTCTCGACGCTCGTCGACGCCGCGTTCGTTGC
CGGCACCGGAGGGACCATCACCTTTGATGCAACGGGTGACATCGCCGAAT
CGCTCACCAACCCGAACAGCTCGAACGCTGTCTTCGCGGACGGGTCCGTG
CTTGCGGAGGTTCGGCGGACGATCGTCGGCACGGGCGCGGCAAGCGGCGA
TGCAACGCGGATCCCGATTTCCGGCAACCTCGGCTTCGGTGGGACGCAGG
ATTTTGGCTTCGCCTTCCAGTCCGCGGACTCGATCAACGCCGTGGGCATC
ACCATCATCTCCCGCTCCGGGCAGACGGCCGCCGACGCCACCGTCACGGC
CACCTTCGCGGCGACCGATGGCTCGGGGAGTCAGACGGTTTCGCAGGCGT
TCGAGCTCGGGTCGAGCGCCGGTGGCGACGACACGTTCTTCGGCTTTGCC
GCACCGACCGGGACGTTTCTGACCGGCCTGGAGATCGAGACGCCGTACTT
CACGCGGGTCGACGACCTCGGCATCACCACCGCCGTTCCCGAGCCCGCCT
CGCTGGGCCTCCTTGCCGCGGGCGGCACCCTGCTGCTC
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