mRNA_P-canaliculata_contig103989.549.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103989.549.1
Unique NamemRNA_P-canaliculata_contig103989.549.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig103989.549.1 vs. uniprot
Match: A0A2E7ME23_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7ME23_9DELT)

HSP 1 Score: 243 bits (619), Expect = 6.800e-75
Identity = 121/244 (49.59%), Postives = 167/244 (68.44%), Query Frame = 1 
Query:    1 VGGTSRLASGMRVEQVSIAYQPIDGLHFKAGQMRVPFTVDQFSGNTQLMFPTRSAPTQVFLRGTDLGATAEYDWKSIA-RISAGVFNGARIS-GNGDSRGLLYSVRADVNPLGPMPGQQADFDRGGLRLGLGAGMVYLPTTSFDSSGFASVSSRDLRGSASVRLAYRGFYFQAEALRRQRTDNLTARPLIATGGYGQASFYLPIKGRFSLAPIARVGFTREDQSFSPRDSLWTEAGTTLYFGRN 726
            V  T+ L +GM +E++S+++ P+  L  K GQMR+PFT    S N +LMFP RSAP  VFLRG+DLG  A+        R++ GVFNG+ +S G    RG L++ R D NPLG  P  + D +RG  RLG+G G+++ P+T +D +G+AS  +RDLR S S+R+A RGF+ QAE LR QRTD+L++RP +ATG YGQ SF + + GRF +APIARVG+T EDQ F PR +++ E G  LY G++
Sbjct:  167 VAQTTELLAGMALEELSVSWSPLAILELKLGQMRIPFTAQHQSPNAELMFPDRSAPNAVFLRGSDLGGLADLRLGGERFRLALGVFNGSGLSSGRSSERGPLFAARIDANPLGAFPFGEGDLERGPFRLGVGGGLLWFPSTIYDRAGYASAQARDLRVSGSLRIAVRGFFLQAELLRYQRTDSLSSRPELATGAYGQMSFLVAVPGRFGVAPIARVGWTAEDQGFDPRQTVFVEGGVALYLGKD 410
[Close]
BLAST of mRNA_P-canaliculata_contig103989.549.1 vs. uniprot
Match: UPI0019C6CC8F (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019C6CC8F)

HSP 1 Score: 194 bits (492), Expect = 2.480e-56
Identity = 110/245 (44.90%), Postives = 146/245 (59.59%), Query Frame = 1 
Query:   28 GMRVEQVSIAYQPIDG-----------LHFKAGQMRVPFTVDQFSGNTQLMFPTRSAPTQVFLRGTDLGATAEYD-WKSIARISAGVFNGARIS-GNGDSRGLLYSVRADVNPLGPMPGQQADFDRGGLRLGLGAGMVYLPTTSFDSSGF-ASVSSRDLRGSASVRLAYRGFYFQAEALRRQRTDNLTARPLIATGGYGQASFYLPIKGRFSLAPIARVGFTREDQSFSPRDSLWTEAGTTLYFG 720
            G+ VE++S+ Y+P+D            L  K GQ+R+P+TV Q   N  LMFP RSAP  VFL GTDLGA A     +    +SAGVFNG  ++    + RG LYS R D+NPLG     + D +R   R G+G G +Y P+  +D +G      +RDLR SAS+R++ RGFY QAE LRRQRTD L++ P I+ G Y Q+S ++ +     +API R G+T  DQ  SPR  L+ EAG  LY G
Sbjct:  125 GLFVEELSVRYRPVDAKRSDRDASLVHLDLKLGQLRIPWTVQQKVFNAALMFPRRSAPNDVFLFGTDLGALASLGVLEDRVELSAGVFNGTGLAVQRSNERGALYSGRLDINPLGGFAYNEGDLERERFRFGVGTGALYFPSRLYDDAGNDTGTRARDLRVSASLRMSVRGFYVQAEYLRRQRTDALSSLPRISQGAYVQSSMFVALPRELGIAPIGRFGWTTTDQRVSPRTVLYGEAGVALYLG 369
[Close]
BLAST of mRNA_P-canaliculata_contig103989.549.1 vs. uniprot
Match: A0A2E2NQ38_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E2NQ38_9DELT)

HSP 1 Score: 188 bits (478), Expect = 1.440e-54
Identity = 104/236 (44.07%), Postives = 144/236 (61.02%), Query Frame = 1 
Query:   10 TSRLASGMRVEQVSIAYQPIDGLHFKAGQMRVPFTVDQFSGNTQLMFPTRSAPTQVFLRGTDLGATAEYD-WKSIARISAGVFNGARISGNGDSRGLLYSVRADVNPLGPMPGQQADFDRGGLRLGLGAGMVYLPTTSFDSSGFASVSSRDLRGSASVRLAYRGFYFQAEALRRQRTDNLTARPLIATGGYGQASFYLPIKGRFSLAPIARVGFTREDQSFSPRDSLWTEAGTTLY 714
            T+   S M VE  ++ Y+P+D  + + GQMR+PFT    S NT LMFP R+ P +VFLRG+DLG  AE + W      S G FNGA     G++ G+LY+ R D+NPLG     +     G  R G+G+G++Y P T++DS+G+ +VS  D R SAS R+A+ G Y   E L RQ  D+ ++RP  ATG YGQA ++LP KG     P+ R+G T  DQ F PR ++W +AG  +Y
Sbjct:  106 TAPAISSMVVES-TVTYRPVDAFNLRLGQMRIPFTSQAQSPNTDLMFPERAGPNEVFLRGSDLGVLAETNLWDERVLGSIGTFNGANAGLYGNTHGVLYTARIDLNPLGSFGFSETSEWAGPFRFGVGSGIIYNPYTAYDSAGYPTVSIADSRLSASGRIAFYGLYVVGEYLYRQELDSQSSRPDKATGWYGQAGWHLP-KG---FEPMFRMGETTNDQGFDPRKTVWLDAGLNIY 336
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103989.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7ME23_9DELT6.800e-7549.59Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
UPI0019C6CC8F2.480e-5644.90Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2E2NQ38_9DELT1.440e-5444.07Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103989contigP-canaliculata_contig103989:4..729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size726
Cds size696
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.3787134-CDS-P-canaliculata_contig103989:3..6991622815610.3787134-CDS-P-canaliculata_contig103989:3..699Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103989 4..699 -
1693494164.8435123-CDS-P-canaliculata_contig103989:3..6991693494164.8435123-CDS-P-canaliculata_contig103989:3..699Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103989 4..699 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.394086-UTR-P-canaliculata_contig103989:699..7291622815610.394086-UTR-P-canaliculata_contig103989:699..729Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103989 700..729 -
1693494164.8526053-UTR-P-canaliculata_contig103989:699..7291693494164.8526053-UTR-P-canaliculata_contig103989:699..729Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103989 700..729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103989.549.1prot_P-canaliculata_contig103989.549.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103989 4..699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103989.549.1

>prot_P-canaliculata_contig103989.549.1 ID=prot_P-canaliculata_contig103989.549.1|Name=mRNA_P-canaliculata_contig103989.549.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=232bp
MRVEQVSIAYQPIDGLHFKAGQMRVPFTVDQFSGNTQLMFPTRSAPTQVF
LRGTDLGATAEYDWKSIARISAGVFNGARISGNGDSRGLLYSVRADVNPL
GPMPGQQADFDRGGLRLGLGAGMVYLPTTSFDSSGFASVSSRDLRGSASV
RLAYRGFYFQAEALRRQRTDNLTARPLIATGGYGQASFYLPIKGRFSLAP
IARVGFTREDQSFSPRDSLWTEAGTTLYFGRN
back to top

mRNA from alignment at P-canaliculata_contig103989:4..729-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103989.549.1 ID=mRNA_P-canaliculata_contig103989.549.1|Name=mRNA_P-canaliculata_contig103989.549.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=726bp|location=Sequence derived from alignment at P-canaliculata_contig103989:4..729- (Pelvetia canaliculata dioecious)
GTGGGAGGCACAAGTCGCTTGGCGTCGGGAATGCGTGTCGAGCAAGTGTC
TATCGCGTACCAGCCAATTGATGGTTTGCATTTCAAGGCTGGACAGATGC
GAGTTCCTTTTACGGTGGACCAGTTCAGCGGGAACACCCAGCTAATGTTT
CCCACACGCTCGGCACCGACGCAGGTTTTCTTGCGCGGAACGGACTTGGG
AGCCACGGCCGAATACGACTGGAAAAGCATCGCGAGAATTTCAGCAGGCG
TTTTCAATGGAGCACGCATAAGCGGCAACGGGGATTCTCGCGGCCTGCTT
TACAGCGTGCGCGCGGATGTAAACCCCTTGGGGCCAATGCCGGGGCAACA
AGCTGATTTTGACAGGGGAGGGCTTCGCCTCGGGCTTGGAGCCGGCATGG
TCTATTTGCCGACTACTTCGTTTGATAGCTCAGGGTTTGCCTCCGTTAGC
TCGCGGGATTTGCGCGGCAGTGCTTCGGTGCGGCTGGCGTATCGCGGGTT
TTATTTCCAAGCGGAGGCATTGCGTCGTCAACGTACCGACAATCTTACCG
CGCGACCTTTGATTGCCACCGGAGGTTACGGGCAAGCATCTTTTTATCTG
CCAATTAAGGGCCGTTTCTCGCTAGCTCCAATCGCGCGGGTTGGTTTTAC
GCGAGAGGACCAGTCTTTTTCTCCAAGGGATAGCTTATGGACCGAAGCGG
GAACCACCCTGTATTTTGGCCGCAAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig103989:4..729-

>mRNA_P-canaliculata_contig103989.549.1 ID=mRNA_P-canaliculata_contig103989.549.1|Name=mRNA_P-canaliculata_contig103989.549.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at P-canaliculata_contig103989:4..729- (Pelvetia canaliculata dioecious)
ATGCGTGTCGAGCAAGTGTCTATCGCGTACCAGCCAATTGATGGTTTGCA
TTTCAAGGCTGGACAGATGCGAGTTCCTTTTACGGTGGACCAGTTCAGCG
GGAACACCCAGCTAATGTTTCCCACACGCTCGGCACCGACGCAGGTTTTC
TTGCGCGGAACGGACTTGGGAGCCACGGCCGAATACGACTGGAAAAGCAT
CGCGAGAATTTCAGCAGGCGTTTTCAATGGAGCACGCATAAGCGGCAACG
GGGATTCTCGCGGCCTGCTTTACAGCGTGCGCGCGGATGTAAACCCCTTG
GGGCCAATGCCGGGGCAACAAGCTGATTTTGACAGGGGAGGGCTTCGCCT
CGGGCTTGGAGCCGGCATGGTCTATTTGCCGACTACTTCGTTTGATAGCT
CAGGGTTTGCCTCCGTTAGCTCGCGGGATTTGCGCGGCAGTGCTTCGGTG
CGGCTGGCGTATCGCGGGTTTTATTTCCAAGCGGAGGCATTGCGTCGTCA
ACGTACCGACAATCTTACCGCGCGACCTTTGATTGCCACCGGAGGTTACG
GGCAAGCATCTTTTTATCTGCCAATTAAGGGCCGTTTCTCGCTAGCTCCA
ATCGCGCGGGTTGGTTTTACGCGAGAGGACCAGTCTTTTTCTCCAAGGGA
TAGCTTATGGACCGAAGCGGGAACCACCCTGTATTTTGGCCGCAACATGC
GTGTCGAGCAAGTGTCTATCGCGTACCAGCCAATTGATGGTTTGCATTTC
AAGGCTGGACAGATGCGAGTTCCTTTTACGGTGGACCAGTTCAGCGGGAA
CACCCAGCTAATGTTTCCCACACGCTCGGCACCGACGCAGGTTTTCTTGC
GCGGAACGGACTTGGGAGCCACGGCCGAATACGACTGGAAAAGCATCGCG
AGAATTTCAGCAGGCGTTTTCAATGGAGCACGCATAAGCGGCAACGGGGA
TTCTCGCGGCCTGCTTTACAGCGTGCGCGCGGATGTAAACCCCTTGGGGC
CAATGCCGGGGCAACAAGCTGATTTTGACAGGGGAGGGCTTCGCCTCGGG
CTTGGAGCCGGCATGGTCTATTTGCCGACTACTTCGTTTGATAGCTCAGG
GTTTGCCTCCGTTAGCTCGCGGGATTTGCGCGGCAGTGCTTCGGTGCGGC
TGGCGTATCGCGGGTTTTATTTCCAAGCGGAGGCATTGCGTCGTCAACGT
ACCGACAATCTTACCGCGCGACCTTTGATTGCCACCGGAGGTTACGGGCA
AGCATCTTTTTATCTGCCAATTAAGGGCCGTTTCTCGCTAGCTCCAATCG
CGCGGGTTGGTTTTACGCGAGAGGACCAGTCTTTTTCTCCAAGGGATAGC
TTATGGACCGAAGCGGGAACCACCCTGTATTTTGGCCGCAAC
back to top