mRNA_P-canaliculata_contig102743.413.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102743.413.1
Unique NamemRNA_P-canaliculata_contig102743.413.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102743.413.1 vs. uniprot
Match: A0A2E4E898_9SPHN (Uncharacterized protein n=1 Tax=Citromicrobium sp. TaxID=2024827 RepID=A0A2E4E898_9SPHN)

HSP 1 Score: 61.2 bits (147), Expect = 7.260e-8
Identity = 52/205 (25.37%), Postives = 92/205 (44.88%), Query Frame = 1 
Query:   49 QIDVAGHQEAIAQIDADLVRIEATITQARDRISLLSELLKDDRPRNAQELASKLLNGADPQEAVATLPNNDDLKAEREQLNAALRELAHTRRDKELERSSAISSARRDLSSALSPLCEHYRNEARDAASRLEESFAALSTLGRCGERDDAMTSTLREAVTAARGDRGPLNRAQLPLVPDEVLSALSYAQTLGLPMRIALPKTVQL 663
            ++D+      +A+++A++ RI   I+ A DR + +S L K DR  +  ++A  LL G     A   LP+++ L+ ER  L   ++ L H R D + E  +    A+  ++  L+PL E    E R AA  L    AA+  L    E      +     + A  G    L   +   V  +++  L+  +  G  ++  L  T+ +
Sbjct:   14 ELDLGAENARVAELEAEIARINQGISTAEDRCTEISRL-KADRNVSGDKVAEALLAGDTASRAADCLPSHEALEEERVALRQGIKTLNHRREDLQSEIDTIRRDAKGKVARLLAPLVEEIIAEERRAAETLRAGHAAICALNFATEHFGTERNQTAGLIEALGGPGKLLPGKRSLQVDSDLVEVLAPLRNKGPALKPGLISTINI 217
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BLAST of mRNA_P-canaliculata_contig102743.413.1 vs. uniprot
Match: A0A0J7XNT4_9SPHN (Uncharacterized protein n=1 Tax=Novosphingobium barchaimii LL02 TaxID=1114963 RepID=A0A0J7XNT4_9SPHN)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-7
Identity = 63/228 (27.63%), Postives = 90/228 (39.47%), Query Frame = 1 
Query:   16 TRSREFQKLAGQIDVAGHQEAIAQIDADLVRIEATITQARDR----ISLLSELLKDDRPRNAQEL--------ASKLLNGADPQEAVATLPNNDDLKAEREQLNAALRELAHTRRDKELERSSAISSARRDLSSALSPLCEHYRNEARDAASRLEESFAALSTLGRCGERDDAMTSTLREAVTAARGDRGPLNRAQLPLVPDEVLSALSYAQTLGLPMRIALPKTVQL 663
            T   E  + A  +D +   E IA ID  L +IE  I  AR R    + L+ EL  +  P     L        A  LL G  P +A A+  +   L+                      +R     +A R     L PLC+ Y ++A++ A+ + ESFAALS +GR    +    +    A T        L       VPDEV++  +     G      LPK+VQL
Sbjct:    5 TALHEATRRAQALDFSAENERIAGIDQQLGQIEEAIQGARARREEVLQLVRELNGESNPARRSTLDIDDGNAVADALLAGVAPADAAASKFDRGALEXXXXXXXXXXXXXXXXXXXXXXQRQDTQRAAARRALEELRPLCQAYLDKAKEGATLIMESFAALSAIGRATNSNPPGLNETAHAATGVSTSGSLLALGNSMPVPDEVVALAAILAGKGAAYMGGLPKSVQL 232
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102743.413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E4E898_9SPHN7.260e-825.37Uncharacterized protein n=1 Tax=Citromicrobium sp.... [more]
A0A0J7XNT4_9SPHN1.120e-727.63Uncharacterized protein n=1 Tax=Novosphingobium ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102743contigP-canaliculata_contig102743:171..836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size666
Cds size666
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.5254815-CDS-P-canaliculata_contig102743:170..8361622815600.5254815-CDS-P-canaliculata_contig102743:170..836Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102743 171..836 -
1693494159.5552871-CDS-P-canaliculata_contig102743:170..8361693494159.5552871-CDS-P-canaliculata_contig102743:170..836Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102743 171..836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102743.413.1prot_P-canaliculata_contig102743.413.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102743 171..836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102743.413.1

>prot_P-canaliculata_contig102743.413.1 ID=prot_P-canaliculata_contig102743.413.1|Name=mRNA_P-canaliculata_contig102743.413.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=222bp
MSNPKTRSREFQKLAGQIDVAGHQEAIAQIDADLVRIEATITQARDRISL
LSELLKDDRPRNAQELASKLLNGADPQEAVATLPNNDDLKAEREQLNAAL
RELAHTRRDKELERSSAISSARRDLSSALSPLCEHYRNEARDAASRLEES
FAALSTLGRCGERDDAMTSTLREAVTAARGDRGPLNRAQLPLVPDEVLSA
LSYAQTLGLPMRIALPKTVQL*
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mRNA from alignment at P-canaliculata_contig102743:171..836-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102743.413.1 ID=mRNA_P-canaliculata_contig102743.413.1|Name=mRNA_P-canaliculata_contig102743.413.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=666bp|location=Sequence derived from alignment at P-canaliculata_contig102743:171..836- (Pelvetia canaliculata dioecious)
ATGTCGAACCCGAAAACCAGAAGCCGTGAGTTCCAAAAACTTGCTGGCCA
GATCGACGTTGCCGGTCATCAAGAGGCAATTGCGCAAATCGATGCCGATC
TTGTCCGAATTGAAGCTACGATAACGCAGGCGCGAGATCGGATCAGCCTA
CTCAGTGAGCTCTTGAAAGATGATAGGCCAAGAAACGCTCAGGAGCTCGC
AAGCAAACTGCTGAACGGTGCAGACCCGCAGGAGGCAGTGGCAACGCTCC
CGAACAACGACGATTTGAAAGCCGAGCGCGAACAGTTGAACGCTGCGTTG
CGAGAATTGGCTCACACACGGCGCGATAAGGAATTGGAACGCAGCAGTGC
GATAAGCTCAGCCAGGCGGGACCTTTCCAGCGCCCTGTCACCGCTATGCG
AACATTATCGCAACGAAGCGCGTGATGCCGCCAGTCGATTGGAAGAAAGC
TTCGCAGCATTGTCCACGCTTGGCCGATGCGGTGAACGCGACGACGCGAT
GACCTCAACGTTAAGGGAAGCGGTCACGGCTGCAAGAGGTGACCGCGGCC
CACTAAATAGGGCGCAATTGCCTTTGGTGCCTGATGAAGTCTTGAGCGCT
CTCTCGTATGCACAGACACTTGGGCTGCCCATGCGCATAGCTTTGCCAAA
GACGGTTCAGCTTTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102743:171..836-

>mRNA_P-canaliculata_contig102743.413.1 ID=mRNA_P-canaliculata_contig102743.413.1|Name=mRNA_P-canaliculata_contig102743.413.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at P-canaliculata_contig102743:171..836- (Pelvetia canaliculata dioecious)
ATGTCGAACCCGAAAACCAGAAGCCGTGAGTTCCAAAAACTTGCTGGCCA
GATCGACGTTGCCGGTCATCAAGAGGCAATTGCGCAAATCGATGCCGATC
TTGTCCGAATTGAAGCTACGATAACGCAGGCGCGAGATCGGATCAGCCTA
CTCAGTGAGCTCTTGAAAGATGATAGGCCAAGAAACGCTCAGGAGCTCGC
AAGCAAACTGCTGAACGGTGCAGACCCGCAGGAGGCAGTGGCAACGCTCC
CGAACAACGACGATTTGAAAGCCGAGCGCGAACAGTTGAACGCTGCGTTG
CGAGAATTGGCTCACACACGGCGCGATAAGGAATTGGAACGCAGCAGTGC
GATAAGCTCAGCCAGGCGGGACCTTTCCAGCGCCCTGTCACCGCTATGCG
AACATTATCGCAACGAAGCGCGTGATGCCGCCAGTCGATTGGAAGAAAGC
TTCGCAGCATTGTCCACGCTTGGCCGATGCGGTGAACGCGACGACGCGAT
GACCTCAACGTTAAGGGAAGCGGTCACGGCTGCAAGAGGTGACCGCGGCC
CACTAAATAGGGCGCAATTGCCTTTGGTGCCTGATGAAGTCTTGAGCGCT
CTCTCGTATGCACAGACACTTGGGCTGCCCATGCGCATAGCTTTGCCAAA
GACGGTTCAGCTTTAAATGTCGAACCCGAAAACCAGAAGCCGTGAGTTCC
AAAAACTTGCTGGCCAGATCGACGTTGCCGGTCATCAAGAGGCAATTGCG
CAAATCGATGCCGATCTTGTCCGAATTGAAGCTACGATAACGCAGGCGCG
AGATCGGATCAGCCTACTCAGTGAGCTCTTGAAAGATGATAGGCCAAGAA
ACGCTCAGGAGCTCGCAAGCAAACTGCTGAACGGTGCAGACCCGCAGGAG
GCAGTGGCAACGCTCCCGAACAACGACGATTTGAAAGCCGAGCGCGAACA
GTTGAACGCTGCGTTGCGAGAATTGGCTCACACACGGCGCGATAAGGAAT
TGGAACGCAGCAGTGCGATAAGCTCAGCCAGGCGGGACCTTTCCAGCGCC
CTGTCACCGCTATGCGAACATTATCGCAACGAAGCGCGTGATGCCGCCAG
TCGATTGGAAGAAAGCTTCGCAGCATTGTCCACGCTTGGCCGATGCGGTG
AACGCGACGACGCGATGACCTCAACGTTAAGGGAAGCGGTCACGGCTGCA
AGAGGTGACCGCGGCCCACTAAATAGGGCGCAATTGCCTTTGGTGCCTGA
TGAAGTCTTGAGCGCTCTCTCGTATGCACAGACACTTGGGCTGCCCATGC
GCATAGCTTTGCCAAAGACGGTTCAGCTTTAA
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