prot_P-canaliculata_contig102743.413.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig102743.413.1
Unique Name	prot_P-canaliculata_contig102743.413.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	222

Homology

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BLAST of mRNA_P-canaliculata_contig102743.413.1 vs. uniprot
Match: A0A2E4E898_9SPHN (Uncharacterized protein n=1 Tax=Citromicrobium sp. TaxID=2024827 RepID=A0A2E4E898_9SPHN)

HSP 1 Score: 61.2 bits (147), Expect = 7.260e-8
Identity = 52/205 (25.37%), Postives = 92/205 (44.88%), Query Frame = 0

Query:   17 QIDVAGHQEAIAQIDADLVRIEATITQARDRISLLSELLKDDRPRNAQELASKLLNGADPQEAVATLPNNDDLKAEREQLNAALRELAHTRRDKELERSSAISSARRDLSSALSPLCEHYRNEARDAASRLEESFAALSTLGRCGERDDAMTSTLREAVTAARGDRGPLNRAQLPLVPDEVLSALSYAQTLGLPMRIALPKTVQL 221
            ++D+      +A+++A++ RI   I+ A DR + +S L K DR  +  ++A  LL G     A   LP+++ L+ ER  L   ++ L H R D + E  +    A+  ++  L+PL E    E R AA  L    AA+  L    E      +     + A  G    L   +   V  +++  L+  +  G  ++  L  T+ +
Sbjct:   14 ELDLGAENARVAELEAEIARINQGISTAEDRCTEISRL-KADRNVSGDKVAEALLAGDTASRAADCLPSHEALEEERVALRQGIKTLNHRREDLQSEIDTIRRDAKGKVARLLAPLVEEIIAEERRAAETLRAGHAAICALNFATEHFGTERNQTAGLIEALGGPGKLLPGKRSLQVDSDLVEVLAPLRNKGPALKPGLISTINI 217

[Close]

BLAST of mRNA_P-canaliculata_contig102743.413.1 vs. uniprot
Match: A0A0J7XNT4_9SPHN (Uncharacterized protein n=1 Tax=Novosphingobium barchaimii LL02 TaxID=1114963 RepID=A0A0J7XNT4_9SPHN)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-7
Identity = 63/228 (27.63%), Postives = 90/228 (39.47%), Query Frame = 0

Query:    6 TRSREFQKLAGQIDVAGHQEAIAQIDADLVRIEATITQARDR----ISLLSELLKDDRPRNAQEL--------ASKLLNGADPQEAVATLPNNDDLKAEREQLNAALRELAHTRRDKELERSSAISSARRDLSSALSPLCEHYRNEARDAASRLEESFAALSTLGRCGERDDAMTSTLREAVTAARGDRGPLNRAQLPLVPDEVLSALSYAQTLGLPMRIALPKTVQL 221
            T   E  + A  +D +   E IA ID  L +IE  I  AR R    + L+ EL  +  P     L        A  LL G  P +A A+  +   L+                      +R     +A R     L PLC+ Y ++A++ A+ + ESFAALS +GR    +    +    A T        L       VPDEV++  +     G      LPK+VQL
Sbjct:    5 TALHEATRRAQALDFSAENERIAGIDQQLGQIEEAIQGARARREEVLQLVRELNGESNPARRSTLDIDDGNAVADALLAGVAPADAAASKFDRGALEXXXXXXXXXXXXXXXXXXXXXXQRQDTQRAAARRALEELRPLCQAYLDKAKEGATLIMESFAALSAIGRATNSNPPGLNETAHAATGVSTSGSLLALGNSMPVPDEVVALAAILAGKGAAYMGGLPKSVQL 232

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig102743.413.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig102743.413.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2E4E898_9SPHN	7.260e-8	25.37	Uncharacterized protein n=1 Tax=Citromicrobium sp....	[more]
A0A0J7XNT4_9SPHN	1.120e-7	27.63	Uncharacterized protein n=1 Tax=Novosphingobium ba...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..113
None	No IPR available	COILS	Coil	Coil	coord: 27..47

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig102743	contig	P-canaliculata_contig102743:171..836 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig102743.413.1	mRNA_P-canaliculata_contig102743.413.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig102743 171..836 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig102743.413.1 ID=prot_P-canaliculata_contig102743.413.1|Name=mRNA_P-canaliculata_contig102743.413.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=222bp
MSNPKTRSREFQKLAGQIDVAGHQEAIAQIDADLVRIEATITQARDRISL
LSELLKDDRPRNAQELASKLLNGADPQEAVATLPNNDDLKAEREQLNAAL
RELAHTRRDKELERSSAISSARRDLSSALSPLCEHYRNEARDAASRLEES
FAALSTLGRCGERDDAMTSTLREAVTAARGDRGPLNRAQLPLVPDEVLSA
LSYAQTLGLPMRIALPKTVQL*