mRNA_P-canaliculata_contig102292.362.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102292.362.1
Unique NamemRNA_P-canaliculata_contig102292.362.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 6.920e-42
Identity = 103/177 (58.19%), Postives = 117/177 (66.10%), Query Frame = 1
Query:    1 ASEAVESALRKQASDKTALPVRSPSGEPAVETLPVT-GAGSRDPKRSRLNPFEAAAAAHAAGARAGSIADESTDEVRERLSTIVDMEVSAFKTAPGLSVSKEVKGAT----VYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516
            AS AV+ AL K A DK       P+ +P V+T P   G G    KR R++ FEAAAA              S DE RE+L  IVDMEVSAFK APG+ V    K  T    V+N+PLD WRKK+ EYPLLAALARRVLAIP+S AQSER+FSTAGL VTPTR+RLL ENVELLVYLR
Sbjct:  370 ASAAVDIALGKHAGDKAPASAEKPASDP-VQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXX-XXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLR 544          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 7.160e-33
Identity = 78/146 (53.42%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    1 ASEAVESALRKQASDKTALPVRSPSGEPAVETLPVTGAGSRDPKRSRLNPFEAAAAAHAAGARAGSIADESTDEVRERLSTIVDMEVSAFKTAPGLSVSK-EVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERI 435
            A++AV+ A  K +SD TA    +P+ +P V T PV   G   PKR+RL+ FEAAAAAHA GA A S   ++ DE RE+L+++VD+EV++F+T PG+S+      G  VYNDPLDWWR ++ E+P LAALARRVLAIP+S A SER+
Sbjct:  406 ATKAVDIAAEKFSSDNTATSGSAPAAQP-VGTPPVAPGGQGAPKRARLSAFEAAAAAHA-GAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.780e-27
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  202 ADESTDEVRERLSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516
            A+ S+  +R ++ +I+  EV AFK  PGL+VS E KG  V   PL+WWR K REYP LA+LARRVL IPA  AQSER+FS+AGLVVT TR R+  ENV L+V+LR
Sbjct:  437 ANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLR 541          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.020e-21
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  205 DESTDEVRERLSTI-VDMEVSAFKTAPGLSVSKEVK-GATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516
            DE  D    RL T  V +E++AFK + G+ + +E K GA VY DPLDWWR +  ++P LA LARRVLAIPA+ A+SER+FS AG +VT  RN L    VELLV LR
Sbjct:  179 DEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLR 284          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A2S2P4C5_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P4C5_SCHGA)

HSP 1 Score: 76.6 bits (187), Expect = 4.060e-15
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  328 DPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYL 513
            DP +WW+  E++YPL+A +A++ L+IPA+   SER FSTAG VVTP RN L  ENV +LV+L
Sbjct:   36 DPFEWWKSHEKKYPLVAKVAKKFLSIPATSVSSERCFSTAGNVVTPKRNCLAPENVNMLVFL 97          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: UPI001955E492 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Osteoglossocephalai TaxID=1489341 RepID=UPI001955E492)

HSP 1 Score: 80.5 bits (197), Expect = 1.580e-14
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  214 TDEVRER-LSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516
            T+E R + LS I+  EV+++K    +SV +         DPL WW+  E +YP +A LA+R LA+  +   SER+FSTAG +VT +R+RLLAENV+ L++L+
Sbjct:  411 TEERRTKPLSDIIHEEVTSYKATGCISVDE---------DPLAWWKSNEHKYPHIAKLAQRNLAVQGTSVPSERVFSTAGDIVTASRSRLLAENVDKLIFLQ 503          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 72.0 bits (175), Expect = 1.030e-13
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  328 DPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYL 513
            DPL WW+  E  YP++AAL +  LAI AS A SER+FSTAG +VT  RN L  ENV LL++L
Sbjct:    1 DPLKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFL 62          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: UPI000BBD9CAA (zinc finger BED domain-containing protein 1-like n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD9CAA)

HSP 1 Score: 75.1 bits (183), Expect = 2.480e-13
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  172 HAAGARAGSIADESTDEVRER--LSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516
            H   A A   AD  T E R    L   +  EV+++K    +SV +         DPL WW+    +YP +A LA+R LA+P +   SER+FSTAG +VT +R+RLL ENV+ L++++
Sbjct:  122 HKKSAMATVFADFFTTEARSTKPLPETIREEVTSYKETSCISVDE---------DPLAWWKTNAHKYPHVAKLAQRDLAVPGTSVPSERVFSTAGDIVTASRSRLLPENVDKLIFMQ 229          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A2G9RVU8_LITCT (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RVU8_LITCT)

HSP 1 Score: 74.7 bits (182), Expect = 2.690e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  316 TVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516
            TV +DPL WW+  E +YP +A +AR  LA+P S   SER+FSTAG +VT TR+ L  +NV++LV+L+
Sbjct:  149 TVDSDPLTWWKSNECKYPHIATMARCYLAVPGSSVPSERVFSTAGDIVTATRSTLSPDNVDILVFLK 215          
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: UPI00109FC612 (zinc finger BED domain-containing protein 4-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109FC612)

HSP 1 Score: 72.4 bits (176), Expect = 3.540e-13
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  217 DEVRERLSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516
            D V +  +  +  +V +++ A G+ V           DPL WW+  E +YP LA +AR  LA+P +   SER+FSTAG +VT  R+ L  ENV++L++L+
Sbjct:   38 DMVSKAFADTIKEKVVSYEAASGIPVD---------GDPLTWWKSNECKYPHLATMARHHLAVPGTSVPSERVFSTAGDIVTAKRSTLSPENVDILMFLK 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI6.920e-4258.19Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE7.160e-3353.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE1.780e-2759.05Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JWI1_9PHAE3.020e-2154.72Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A2S2P4C5_SCHGA4.060e-1556.45Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI001955E4921.580e-1444.12E3 SUMO-protein ligase ZBED1-like n=2 Tax=Osteoglo... [more]
E2BS40_HARSA1.030e-1358.06Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI000BBD9CAA2.480e-1339.32zinc finger BED domain-containing protein 1-like n... [more]
A0A2G9RVU8_LITCT2.690e-1352.24Dimer_Tnp_hAT domain-containing protein n=1 Tax=Li... [more]
UPI00109FC6123.540e-1338.00zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102292contigP-canaliculata_contig102292:227..742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size516
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102292.362.1prot_P-canaliculata_contig102292.362.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102292 479..643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.7660458-UTR-P-canaliculata_contig102292:226..4781622815596.7660458-UTR-P-canaliculata_contig102292:226..478Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102292 227..478 +
1693494157.3627095-UTR-P-canaliculata_contig102292:226..4781693494157.3627095-UTR-P-canaliculata_contig102292:226..478Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102292 227..478 +
1622815596.787739-UTR-P-canaliculata_contig102292:643..7421622815596.787739-UTR-P-canaliculata_contig102292:643..742Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102292 644..742 +
1693494157.3923855-UTR-P-canaliculata_contig102292:643..7421693494157.3923855-UTR-P-canaliculata_contig102292:643..742Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102292 644..742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.7769535-CDS-P-canaliculata_contig102292:478..6431622815596.7769535-CDS-P-canaliculata_contig102292:478..643Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102292 479..643 +
1693494157.3823931-CDS-P-canaliculata_contig102292:478..6431693494157.3823931-CDS-P-canaliculata_contig102292:478..643Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102292 479..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102292.362.1

>prot_P-canaliculata_contig102292.362.1 ID=prot_P-canaliculata_contig102292.362.1|Name=mRNA_P-canaliculata_contig102292.362.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=55bp
MEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLA
IPAS*
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mRNA from alignment at P-canaliculata_contig102292:227..742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102292.362.1 ID=mRNA_P-canaliculata_contig102292.362.1|Name=mRNA_P-canaliculata_contig102292.362.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at P-canaliculata_contig102292:227..742+ (Pelvetia canaliculata dioecious)
GCCAGCGAAGCAGTGGAGAGTGCTCTGAGGAAGCAGGCCAGCGACAAGAC AGCCCTCCCGGTGAGATCGCCTTCTGGGGAGCCTGCCGTCGAGACGTTGC CAGTCACGGGCGCCGGCTCGAGAGACCCGAAGCGATCTCGACTGAACCCC TTCGAGGCCGCCGCGGCTGCCCACGCCGCGGGTGCAAGGGCCGGTAGTAT CGCTGACGAATCCACGGATGAGGTCCGGGAGAGACTGTCCACCATCGTCG ACATGGAGGTCTCCGCCTTCAAGACTGCACCTGGGTTGAGTGTTTCGAAG GAAGTAAAAGGAGCGACGGTCTACAATGATCCCCTCGACTGGTGGCGCAA GAAGGAACGGGAGTACCCTCTACTGGCCGCTTTAGCTCGTCGTGTGCTTG CCATTCCCGCCTCATAAGCGCAGTCTGAGCGCATTTTTTCTACGGCAGGG CTAGTCGTGACGCCCACGCGGAACAGACTGCTTGCGGAAAATGTTGAGCT TCTGGTGTACTTGCGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig102292:227..742+

>mRNA_P-canaliculata_contig102292.362.1 ID=mRNA_P-canaliculata_contig102292.362.1|Name=mRNA_P-canaliculata_contig102292.362.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at P-canaliculata_contig102292:227..742+ (Pelvetia canaliculata dioecious)
ATGGAGGTCTCCGCCTTCAAGACTGCACCTGGGTTGAGTGTTTCGAAGGA
AGTAAAAGGAGCGACGGTCTACAATGATCCCCTCGACTGGTGGCGCAAGA
AGGAACGGGAGTACCCTCTACTGGCCGCTTTAGCTCGTCGTGTGCTTGCC
ATTCCCGCCTCATAAATGGAGGTCTCCGCCTTCAAGACTGCACCTGGGTT
GAGTGTTTCGAAGGAAGTAAAAGGAGCGACGGTCTACAATGATCCCCTCG
ACTGGTGGCGCAAGAAGGAACGGGAGTACCCTCTACTGGCCGCTTTAGCT
CGTCGTGTGCTTGCCATTCCCGCCTCATAA
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