mRNA_P-canaliculata_contig102292.362.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 156 bits (395), Expect = 6.920e-42 Identity = 103/177 (58.19%), Postives = 117/177 (66.10%), Query Frame = 1 Query: 1 ASEAVESALRKQASDKTALPVRSPSGEPAVETLPVT-GAGSRDPKRSRLNPFEAAAAAHAAGARAGSIADESTDEVRERLSTIVDMEVSAFKTAPGLSVSKEVKGAT----VYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516 AS AV+ AL K A DK P+ +P V+T P G G KR R++ FEAAAA S DE RE+L IVDMEVSAFK APG+ V K T V+N+PLD WRKK+ EYPLLAALARRVLAIP+S AQSER+FSTAGL VTPTR+RLL ENVELLVYLR Sbjct: 370 ASAAVDIALGKHAGDKAPASAEKPASDP-VQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXX-XXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLR 544
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 132 bits (331), Expect = 7.160e-33 Identity = 78/146 (53.42%), Postives = 104/146 (71.23%), Query Frame = 1 Query: 1 ASEAVESALRKQASDKTALPVRSPSGEPAVETLPVTGAGSRDPKRSRLNPFEAAAAAHAAGARAGSIADESTDEVRERLSTIVDMEVSAFKTAPGLSVSK-EVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERI 435 A++AV+ A K +SD TA +P+ +P V T PV G PKR+RL+ FEAAAAAHA GA A S ++ DE RE+L+++VD+EV++F+T PG+S+ G VYNDPLDWWR ++ E+P LAALARRVLAIP+S A SER+ Sbjct: 406 ATKAVDIAAEKFSSDNTATSGSAPAAQP-VGTPPVAPGGQGAPKRARLSAFEAAAAAHA-GAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.780e-27 Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1 Query: 202 ADESTDEVRERLSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516 A+ S+ +R ++ +I+ EV AFK PGL+VS E KG V PL+WWR K REYP LA+LARRVL IPA AQSER+FS+AGLVVT TR R+ ENV L+V+LR Sbjct: 437 ANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLR 541
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 3.020e-21 Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 205 DESTDEVRERLSTI-VDMEVSAFKTAPGLSVSKEVK-GATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516 DE D RL T V +E++AFK + G+ + +E K GA VY DPLDWWR + ++P LA LARRVLAIPA+ A+SER+FS AG +VT RN L VELLV LR Sbjct: 179 DEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLR 284
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A2S2P4C5_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P4C5_SCHGA) HSP 1 Score: 76.6 bits (187), Expect = 4.060e-15 Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1 Query: 328 DPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYL 513 DP +WW+ E++YPL+A +A++ L+IPA+ SER FSTAG VVTP RN L ENV +LV+L Sbjct: 36 DPFEWWKSHEKKYPLVAKVAKKFLSIPATSVSSERCFSTAGNVVTPKRNCLAPENVNMLVFL 97
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: UPI001955E492 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Osteoglossocephalai TaxID=1489341 RepID=UPI001955E492) HSP 1 Score: 80.5 bits (197), Expect = 1.580e-14 Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 214 TDEVRER-LSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516 T+E R + LS I+ EV+++K +SV + DPL WW+ E +YP +A LA+R LA+ + SER+FSTAG +VT +R+RLLAENV+ L++L+ Sbjct: 411 TEERRTKPLSDIIHEEVTSYKATGCISVDE---------DPLAWWKSNEHKYPHIAKLAQRNLAVQGTSVPSERVFSTAGDIVTASRSRLLAENVDKLIFLQ 503
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA) HSP 1 Score: 72.0 bits (175), Expect = 1.030e-13 Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 328 DPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYL 513 DPL WW+ E YP++AAL + LAI AS A SER+FSTAG +VT RN L ENV LL++L Sbjct: 1 DPLKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFL 62
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: UPI000BBD9CAA (zinc finger BED domain-containing protein 1-like n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD9CAA) HSP 1 Score: 75.1 bits (183), Expect = 2.480e-13 Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 172 HAAGARAGSIADESTDEVRER--LSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516 H A A AD T E R L + EV+++K +SV + DPL WW+ +YP +A LA+R LA+P + SER+FSTAG +VT +R+RLL ENV+ L++++ Sbjct: 122 HKKSAMATVFADFFTTEARSTKPLPETIREEVTSYKETSCISVDE---------DPLAWWKTNAHKYPHVAKLAQRDLAVPGTSVPSERVFSTAGDIVTASRSRLLPENVDKLIFMQ 229
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: A0A2G9RVU8_LITCT (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RVU8_LITCT) HSP 1 Score: 74.7 bits (182), Expect = 2.690e-13 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1 Query: 316 TVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516 TV +DPL WW+ E +YP +A +AR LA+P S SER+FSTAG +VT TR+ L +NV++LV+L+ Sbjct: 149 TVDSDPLTWWKSNECKYPHIATMARCYLAVPGSSVPSERVFSTAGDIVTATRSTLSPDNVDILVFLK 215
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Match: UPI00109FC612 (zinc finger BED domain-containing protein 4-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109FC612) HSP 1 Score: 72.4 bits (176), Expect = 3.540e-13 Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 217 DEVRERLSTIVDMEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAIPAS*AQSERIFSTAGLVVTPTRNRLLAENVELLVYLR 516 D V + + + +V +++ A G+ V DPL WW+ E +YP LA +AR LA+P + SER+FSTAG +VT R+ L ENV++L++L+ Sbjct: 38 DMVSKAFADTIKEKVVSYEAASGIPVD---------GDPLTWWKSNECKYPHLATMARHHLAVPGTSVPSERVFSTAGDIVTAKRSTLSPENVDILMFLK 128 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102292.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102292.362.1 >prot_P-canaliculata_contig102292.362.1 ID=prot_P-canaliculata_contig102292.362.1|Name=mRNA_P-canaliculata_contig102292.362.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=55bp MEVSAFKTAPGLSVSKEVKGATVYNDPLDWWRKKEREYPLLAALARRVLAback to top mRNA from alignment at P-canaliculata_contig102292:227..742+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102292.362.1 ID=mRNA_P-canaliculata_contig102292.362.1|Name=mRNA_P-canaliculata_contig102292.362.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at P-canaliculata_contig102292:227..742+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102292:227..742+ >mRNA_P-canaliculata_contig102292.362.1 ID=mRNA_P-canaliculata_contig102292.362.1|Name=mRNA_P-canaliculata_contig102292.362.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at P-canaliculata_contig102292:227..742+ (Pelvetia canaliculata dioecious)back to top |