mRNA_P-canaliculata_contig102209.346.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A517P1Z1_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517P1Z1_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 2.950e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1

Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIF 189
            P NP+L P  TG+  +NSEATFLQIT V S A  DR+ FAAGPLIT GQL  + F+F
Sbjct:  120 PTNPVLAPQPTGLGGVNSEATFLQITPVLSYAATDRLSFAAGPLITTGQLGIDPFVF 176

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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A0J1B525_RHOIS (Membrane protein involved in aromatic hydrocarbon degradation n=2 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B525_RHOIS)

HSP 1 Score: 61.6 bits (148), Expect = 1.560e-9
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1

Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            P NP+L P  TG+  I SEA+FLQI  V S+A  +R+  AAGPLIT GQ+  E F+F S
Sbjct:   98 PTNPVLAPQPTGLGQITSEASFLQIAPVLSMAMTERLSVAAGPLITTGQVGIEPFVFDS 156

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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A5C6EQK6_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EQK6_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 4.070e-9
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1

Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            P NP+L P   G+  ++SEATFLQI+ V S+A  +R+ FAAGP+IT  Q+  E F+F S
Sbjct:  139 PTNPVLAPQPFGLGRVSSEATFLQISPVLSMAVSERISFAAGPIITSAQVGIEPFVFDS 197

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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A2G1W510_9BACT (Hydrocarbon degradation protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W510_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 5.560e-9
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            NP+L P  TG+  I SEA+FLQI  V S+A  +R+  AAGPLIT GQ+  E F+F S
Sbjct:  137 NPVLAPQPTGLGQITSEASFLQIAPVLSMAVTERMSVAAGPLITTGQVGLEPFVFDS 193

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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: Q7UUD0_RHOBA (Uncharacterized protein n=7 Tax=Rhodopirellula TaxID=265488 RepID=Q7UUD0_RHOBA)

HSP 1 Score: 59.7 bits (143), Expect = 7.610e-9
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            NP+L P  TG+  I SEA+FLQI  V S+A  +R+  AAGPL+T GQ+  E F+F S
Sbjct:  137 NPVLAPQPTGLGQITSEASFLQIAPVLSMAVTERMSVAAGPLVTTGQVGIEPFVFDS 193

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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: UPI001E3CABFD (outer membrane protein transport protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E3CABFD)

HSP 1 Score: 58.5 bits (140), Expect = 1.950e-8
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            NP+L P  TG+  I+SEA FLQI  V S+A  +R+  AAGP++T GQ+  E F+F S
Sbjct:  137 NPVLAPQPTGLGQISSEAAFLQIAPVLSMAMTERLSVAAGPILTTGQVGIEPFVFDS 193

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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A5C6DTD9_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=2 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DTD9_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 4.900e-5
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1

Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            P NP L P  TG+  ++S A+FLQI  V S+A  D +  AAGP +T G++  + F+F S
Sbjct:  137 PTNPALAP--TGLGRVDSNASFLQIAPVLSVALRDNLSVAAGPTLTAGRISLDPFVFGS 193

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7

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POSITION

0


Match Name	E-value	Identity	Description
A0A517P1Z1_9BACT	2.950e-12	61.40	Outer membrane protein transport protein (OMPP1/Fa...	[more]
A0A0J1B525_RHOIS	1.560e-9	54.24	Membrane protein involved in aromatic hydrocarbon ...	[more]
A0A5C6EQK6_9BACT	4.070e-9	50.85	Outer membrane protein transport protein (OMPP1/Fa...	[more]
A0A2G1W510_9BACT	5.560e-9	54.39	Hydrocarbon degradation protein n=1 Tax=Rhodopirel...	[more]
Q7UUD0_RHOBA	7.610e-9	52.63	Uncharacterized protein n=7 Tax=Rhodopirellula Tax...	[more]
UPI001E3CABFD	1.950e-8	50.88	outer membrane protein transport protein n=2 Tax=u...	[more]
A0A5C6DTD9_9BACT	4.900e-5	44.07	Outer membrane protein transport protein (OMPP1/Fa...	[more]

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815595.518636-CDS-P-canaliculata_contig102209:746..941	1622815595.518636-CDS-P-canaliculata_contig102209:746..941	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig102209 747..941 +
1693494156.6276884-CDS-P-canaliculata_contig102209:746..941	1693494156.6276884-CDS-P-canaliculata_contig102209:746..941	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig102209 747..941 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig102209.346.1	prot_P-canaliculata_contig102209.346.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig102209 747..941 +