mRNA_P-canaliculata_contig102209.346.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102209.346.1
Unique NamemRNA_P-canaliculata_contig102209.346.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A517P1Z1_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517P1Z1_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 2.950e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIF 189
            P NP+L P  TG+  +NSEATFLQIT V S A  DR+ FAAGPLIT GQL  + F+F
Sbjct:  120 PTNPVLAPQPTGLGGVNSEATFLQITPVLSYAATDRLSFAAGPLITTGQLGIDPFVF 176
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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A0J1B525_RHOIS (Membrane protein involved in aromatic hydrocarbon degradation n=2 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B525_RHOIS)

HSP 1 Score: 61.6 bits (148), Expect = 1.560e-9
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            P NP+L P  TG+  I SEA+FLQI  V S+A  +R+  AAGPLIT GQ+  E F+F S
Sbjct:   98 PTNPVLAPQPTGLGQITSEASFLQIAPVLSMAMTERLSVAAGPLITTGQVGIEPFVFDS 156
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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A5C6EQK6_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EQK6_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 4.070e-9
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            P NP+L P   G+  ++SEATFLQI+ V S+A  +R+ FAAGP+IT  Q+  E F+F S
Sbjct:  139 PTNPVLAPQPFGLGRVSSEATFLQISPVLSMAVSERISFAAGPIITSAQVGIEPFVFDS 197
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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A2G1W510_9BACT (Hydrocarbon degradation protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W510_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 5.560e-9
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            NP+L P  TG+  I SEA+FLQI  V S+A  +R+  AAGPLIT GQ+  E F+F S
Sbjct:  137 NPVLAPQPTGLGQITSEASFLQIAPVLSMAVTERMSVAAGPLITTGQVGLEPFVFDS 193
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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: Q7UUD0_RHOBA (Uncharacterized protein n=7 Tax=Rhodopirellula TaxID=265488 RepID=Q7UUD0_RHOBA)

HSP 1 Score: 59.7 bits (143), Expect = 7.610e-9
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            NP+L P  TG+  I SEA+FLQI  V S+A  +R+  AAGPL+T GQ+  E F+F S
Sbjct:  137 NPVLAPQPTGLGQITSEASFLQIAPVLSMAVTERMSVAAGPLVTTGQVGIEPFVFDS 193
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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: UPI001E3CABFD (outer membrane protein transport protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E3CABFD)

HSP 1 Score: 58.5 bits (140), Expect = 1.950e-8
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   25 NPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            NP+L P  TG+  I+SEA FLQI  V S+A  +R+  AAGP++T GQ+  E F+F S
Sbjct:  137 NPVLAPQPTGLGQISSEAAFLQIAPVLSMAMTERLSVAAGPILTTGQVGIEPFVFDS 193
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BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Match: A0A5C6DTD9_9BACT (Outer membrane protein transport protein (OMPP1/FadL/TodX) n=2 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DTD9_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 4.900e-5
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   19 PFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPLITLGQLESELFIFSS 195
            P NP L P  TG+  ++S A+FLQI  V S+A  D +  AAGP +T G++  + F+F S
Sbjct:  137 PTNPALAP--TGLGRVDSNASFLQIAPVLSVALRDNLSVAAGPTLTAGRISLDPFVFGS 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102209.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A517P1Z1_9BACT2.950e-1261.40Outer membrane protein transport protein (OMPP1/Fa... [more]
A0A0J1B525_RHOIS1.560e-954.24Membrane protein involved in aromatic hydrocarbon ... [more]
A0A5C6EQK6_9BACT4.070e-950.85Outer membrane protein transport protein (OMPP1/Fa... [more]
A0A2G1W510_9BACT5.560e-954.39Hydrocarbon degradation protein n=1 Tax=Rhodopirel... [more]
Q7UUD0_RHOBA7.610e-952.63Uncharacterized protein n=7 Tax=Rhodopirellula Tax... [more]
UPI001E3CABFD1.950e-850.88outer membrane protein transport protein n=2 Tax=u... [more]
A0A5C6DTD9_9BACT4.900e-544.07Outer membrane protein transport protein (OMPP1/Fa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102209contigP-canaliculata_contig102209:747..941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog243090.RB3367
KEGG koko:K06076
KEGG TC1.B.9
EggNOG free text desc.Outer membrane protein transport protein (OMPP1/FadL/TodX)
EggNOG OGs2J1VR@203682,COG2067@1,COG2067@2
COG Functional cat.I
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.518636-CDS-P-canaliculata_contig102209:746..9411622815595.518636-CDS-P-canaliculata_contig102209:746..941Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102209 747..941 +
1693494156.6276884-CDS-P-canaliculata_contig102209:746..9411693494156.6276884-CDS-P-canaliculata_contig102209:746..941Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102209 747..941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102209.346.1prot_P-canaliculata_contig102209.346.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102209 747..941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102209.346.1

>prot_P-canaliculata_contig102209.346.1 ID=prot_P-canaliculata_contig102209.346.1|Name=mRNA_P-canaliculata_contig102209.346.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=65bp
MSKFFYPFNPILTPPLTGVRAINSEATFLQITLVPSLAEIDRVWFAAGPL
ITLGQLESELFIFSS
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mRNA from alignment at P-canaliculata_contig102209:747..941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102209.346.1 ID=mRNA_P-canaliculata_contig102209.346.1|Name=mRNA_P-canaliculata_contig102209.346.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at P-canaliculata_contig102209:747..941+ (Pelvetia canaliculata dioecious)
ATGTCGAAATTCTTCTATCCATTCAATCCAATTCTGACACCACCACTGAC
TGGCGTGAGAGCCATCAATTCGGAAGCAACGTTTCTGCAAATTACACTTG
TCCCTTCCCTCGCAGAAATCGACCGAGTTTGGTTCGCGGCAGGCCCGCTG
ATCACATTGGGGCAACTAGAATCCGAGCTTTTTATCTTTTCTTCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102209:747..941+

>mRNA_P-canaliculata_contig102209.346.1 ID=mRNA_P-canaliculata_contig102209.346.1|Name=mRNA_P-canaliculata_contig102209.346.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at P-canaliculata_contig102209:747..941+ (Pelvetia canaliculata dioecious)
ATGTCGAAATTCTTCTATCCATTCAATCCAATTCTGACACCACCACTGAC
TGGCGTGAGAGCCATCAATTCGGAAGCAACGTTTCTGCAAATTACACTTG
TCCCTTCCCTCGCAGAAATCGACCGAGTTTGGTTCGCGGCAGGCCCGCTG
ATCACATTGGGGCAACTAGAATCCGAGCTTTTTATCTTTTCTTCGATGTC
GAAATTCTTCTATCCATTCAATCCAATTCTGACACCACCACTGACTGGCG
TGAGAGCCATCAATTCGGAAGCAACGTTTCTGCAAATTACACTTGTCCCT
TCCCTCGCAGAAATCGACCGAGTTTGGTTCGCGGCAGGCCCGCTGATCAC
ATTGGGGCAACTAGAATCCGAGCTTTTTATCTTTTCTTCG
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