mRNA_P-canaliculata_contig10216.342.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A6H5KBP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP8_9PHAE) HSP 1 Score: 299 bits (765), Expect = 1.290e-96 Identity = 162/247 (65.59%), Postives = 188/247 (76.11%), Query Frame = 1 Query: 1 ATSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLP--------GFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 717
AT+LV+DEADMLMEGSY++QLDDILV+FRRAD++ E G G ++TQYVLAAATLPTYGLKSVDQY+KRAFP A KIQQVHMH+HHPAIQQ F+EVG + DKI+AV++LLR DT SE + +RTMVF NTA+SCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL ATNF+D TK +T
Sbjct: 186 ATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGSVVDGSVRRRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLR--DTV-SETDTSRTMVFTNTASSCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 429
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: D7FR69_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR69_ECTSI) HSP 1 Score: 300 bits (769), Expect = 6.680e-95 Identity = 163/247 (65.99%), Postives = 189/247 (76.52%), Query Frame = 1 Query: 1 ATSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMG--------LPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 717
AT+LV+DEADMLMEGSY++QLDDILV+FRRAD++ E G G ++TQYVLAAATLPTYGLKSVDQY+KRAFP A KIQQVHMH+HHPAIQQ F+EVG + DKI+AV++LLR DT S+A+ +RTMVF NTAASCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL ATNF+D TK +T
Sbjct: 386 ATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPIVDGRGRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLR--DTV-SDADTSRTMVFTNTAASCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 629
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: W7TS57_9STRA (RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS57_9STRA) HSP 1 Score: 178 bits (451), Expect = 2.600e-48 Identity = 105/245 (42.86%), Postives = 139/245 (56.73%), Query Frame = 1 Query: 10 LVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERT--------------------RTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFD 684
LV+DEADML+EG Y R L+ ILV+F+RADK+ P TQYVLAAATLP+YGLKSV++ VK+ FP A ++ MHKHHP + Q F+E E + KI ++ +L T EA R +TMVF NTA + A+ GF V++HKEV +R NL+ +S +LVCTDLA+RG+D+P V ++VQ+E A NVV HL A NF+D
Sbjct: 345 LVVDEADMLLEGDYGRHLERILVAFKRADKLHTARSEP---LTQYVLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVLEKLRTKGEEARRAEGGKEXXXXXEGEAQATILPKTMVFLNTATAAARTQIAVQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDVRQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYD 586
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S4D991_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D991_HETAK) HSP 1 Score: 167 bits (423), Expect = 1.790e-47 Identity = 99/220 (45.00%), Postives = 135/220 (61.36%), Query Frame = 1 Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQ-----------AEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLL--RGGDTS*SEAERT-RTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
+LV+DEADML++G Y QLD ++V+ +R ++ AE L R Q VLAAATLPTYGLKSVD YV++ F A ++ MH+HHP + Q+FIEVG + +KIEA++ L + + A T R MVF NT A+ + ALA EG +YHK+ P +R L ++G + +LVCTDLA+RG+DVP VT ++Q E A NVV HL
Sbjct: 50 ALVLDEADMLLDGGYLAQLDKVMVALKRVGRMAETARGRYQDAYAEGALYTPARCQRVLAAATLPTYGLKSVDAYVRKHFKGAARVGTGLMHRHHPRLHQDFIEVGGSLGEKIEALLAYLDEEAAEGRGAGAPGTMRAMVFCNTVAAAEEVAAALAAEGVPCAAYHKKTPPAEREGALARFRAGESPVLVCTDLAARGLDVPGVTHVLQAEFAPNVVQHL 269
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S2R527_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R527_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.160e-41 Identity = 103/257 (40.08%), Postives = 143/257 (55.64%), Query Frame = 1 Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTR-------------------TMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLTG 720
++V+DEADML++G Y Q+D+ILV+ +R +++ + TQ +L+AAT+PTYGLKSVD+ V + FP A +++ +H+ P ++ ++EV E + D+ E GG T S A R TMVFANTA + ACE L + G YHKEV R ENL SG ILVCTD+A+RGID+ V +VQ E A+NVV HL XXXXX AT+F D S+ ++ G
Sbjct: 22 AIVLDEADMLLDGGYLNQVDEILVARKRILRMRQQHEPVVDRHTQVILSAATIPTYGLKSVDKLVAKRFPNAARVENDLLHRTQPQLEHHWVEV-ESMGDERE-------GGATVGSRAFAARCLQLEELLRPATPSDPIPRTMVFANTATTAAAACEYLRKAGLPAAEYHKEVLVGIREENLGLFSSGQVPILVCTDMAARGIDIQGVQHVVQFEFASNVVQHLHRLGRTXXXXXQGTATHFVDPSSDLAERIRRG 270
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S1D4C6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4C6_CYCTE) HSP 1 Score: 146 bits (369), Expect = 1.080e-38 Identity = 88/217 (40.55%), Postives = 128/217 (58.99%), Query Frame = 1 Query: 4 TSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK--------SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
++LV+DEADML++G Y R L+D+++ FRRADK+ + +P RTQ V AATLP G++SVD Y+++ FP+A ++ MH KH+ ++ E D++ +V+LL T E + MVF N+ A AL G + V YH ++A RDR NL + +A +LVCTDLASRG+D+P VT +VQ++ A NVV HL
Sbjct: 52 STLVVDEADMLLDGGYIRPLEDVMIGFRRADKLDSSHDVP---RTQNVFVAATLPDMGVRSVDAYLQKKFPYAQRVAMAGMHNAKHYGLRERTLWIEEEENRDRMLRLVDLLNKPTTE-GGLEGEKVMVFLNSVDDVDGAYGALKRAGIAVVPYHAKIALRDRTANLDRFRRYGAAEPGEDAAAVLVCTDLASRGLDIPGVTAVVQLQFAGNVVSHL 264
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A0G4ESI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESI9_VITBC) HSP 1 Score: 146 bits (369), Expect = 2.070e-37 Identity = 87/241 (36.10%), Postives = 138/241 (57.26%), Query Frame = 1 Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHIS--DKIEAVVNLL---------RGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTK 696
+LV+DEAD+L++G YK+ L+ +L FRR+ + G P TQ+++ AATLP G SVD +++R FP A +++ MH+H P +QQ+FI +G S D++ +V+ + RGG+ + + +T++FANT S K AL + G V H ++ +R+ NL A + G + ILVCTDLA+RG+D+P + ++Q + A NVV HL X A NF+ ++
Sbjct: 230 TLVVDEADLLLDGGYKKDLEAVLTVFRRSGR----QGAP----TQHIMVAATLPNRGSGSVDAFLERRFPEALRVRNSLMHQHLPGMQQDFIPIGYDASTRDRLNMLVDKVTEMQRDRASRGGEEA---VDVGKTIIFANTVNSAKAVANALFDVGIPVVPCHADLRAAERISNLDAFRRGISSILVCTDLAARGLDIPRIATVIQFDFAPNVVAHLHRVGRAARAGXAGHAINFYGKDSE 459
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A1Z5JPU2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPU2_FISSO) HSP 1 Score: 144 bits (364), Expect = 1.310e-36 Identity = 89/213 (41.78%), Postives = 132/213 (61.97%), Query Frame = 1 Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADK-IQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK----SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
SL++DEADML++G Y R L+ +L+ FRRAD+ I + P TQYV AATLP GL+SVD Y+K+ FP A I ++H KH ++ ++I + E ++++AVV +L +E + M+F N+ + A AL G S + YH ++ ++R E L+A + +G + ILVCTDLASRG+DVP VT ++Q++ ATNVV HL
Sbjct: 222 SLIVDEADMLLDGGYVRALEQVLMGFRRADRTIHSTEQRP----TQYVFVAATLPDSGLRSVDAYLKKKFPSAEYITTANLHNAKHEGLLETQWIAL-ESKQERMKAVVEMLSQHQQQ-QGSEGEKIMIFLNSVQDVENASAALQRAGVSVLRYHAKLNLQERTETLEAFRQSTANGQSSILVCTDLASRGLDVPDVTLVIQLQFATNVVTHL 428
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A1E7F9N5_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9N5_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.420e-34 Identity = 77/213 (36.15%), Postives = 127/213 (59.62%), Query Frame = 1 Query: 31 MLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTR---TMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK----------SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
ML++G Y R L+++L+ F+RAD++ A++ + ++TQ+V AATLP GLKSVD Y+++ FP+A++I MH KH+ Q+ E +++E +V +L D ++ + + TMVF N+ + +AL + G + V YH +++ +R ENL + + +L+CTDLASRG+DVP VT +VQ++ + NVV HL
Sbjct: 1 MLLDGGYIRSLENVLMGFKRADRLSADLNV---KKTQHVFVAATLPDVGLKSVDAYLQKKFPYANRINTNDMHNAKHYGLSQETKWYQVETKKERMERLVEMLLSSDEDNADVDSLKGEKTMVFLNSVDDVESVHQALVQRGINAVPYHAKISLNERSENLDRFRRYDSDNNADAGDTVPVLICTDLASRGLDVPGVTAVVQLQFSGNVVSHL 210
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A448ZNQ7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNQ7_9STRA) HSP 1 Score: 138 bits (348), Expect = 5.080e-34 Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 1 Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKI---QAEMGLPG-FERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLL--RGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAK-----------ILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
+LV+DEADML++G Y R L+++L+ FRRAD++ A+ PG +TQ++ AATLP GLKSV+ Y++R FP+A++I+ +MH KH+ + E +++E + LL + + + +TMVF N+ + +AL + G VSYH +++ +R ENL + S++ +LVCTDLASRG+DVP VT +VQ++ + NVV HL
Sbjct: 299 TLVVDEADMLLDGGYIRALENVLIGFRRADRLVDPSADPSDPGTIRKTQHIFCAATLPDVGLKSVNAYLERRFPYANRIETGNMHNAKHYGLSKATKWYQVETKKERMERLAELLVTERDENNEDGLKGEKTMVFLNSVDDVEGVHQALVQRGVDAVSYHAKISLNERSENLDRFRRFSSENEKDNDGDAVPVLVCTDLASRGLDVPGVTAVVQLQFSGNVVSHL 523 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10216.342.1 >prot_P-canaliculata_contig10216.342.1 ID=prot_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKIback to top mRNA from alignment at P-canaliculata_contig10216:4105..11615- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10216.342.1 ID=mRNA_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7511bp|location=Sequence derived from alignment at P-canaliculata_contig10216:4105..11615- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10216:4105..11615- >mRNA_P-canaliculata_contig10216.342.1 ID=mRNA_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig10216:4105..11615- (Pelvetia canaliculata dioecious)back to top |