Homology
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A6H5KBP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP8_9PHAE)
HSP 1 Score: 299 bits (765), Expect = 1.290e-96
Identity = 162/247 (65.59%), Postives = 188/247 (76.11%), Query Frame = 1
Query: 1 ATSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLP--------GFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 717
AT+LV+DEADMLMEGSY++QLDDILV+FRRAD++ E G G ++TQYVLAAATLPTYGLKSVDQY+KRAFP A KIQQVHMH+HHPAIQQ F+EVG + DKI+AV++LLR DT SE + +RTMVF NTA+SCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL ATNF+D TK +T
Sbjct: 186 ATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGSVVDGSVRRRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLR--DTV-SETDTSRTMVFTNTASSCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 429
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
D7FR69_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR69_ECTSI)
HSP 1 Score: 300 bits (769), Expect = 6.680e-95
Identity = 163/247 (65.99%), Postives = 189/247 (76.52%), Query Frame = 1
Query: 1 ATSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMG--------LPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 717
AT+LV+DEADMLMEGSY++QLDDILV+FRRAD++ E G G ++TQYVLAAATLPTYGLKSVDQY+KRAFP A KIQQVHMH+HHPAIQQ F+EVG + DKI+AV++LLR DT S+A+ +RTMVF NTAASCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL ATNF+D TK +T
Sbjct: 386 ATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPIVDGRGRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLR--DTV-SDADTSRTMVFTNTAASCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 629
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
W7TS57_9STRA (RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS57_9STRA)
HSP 1 Score: 178 bits (451), Expect = 2.600e-48
Identity = 105/245 (42.86%), Postives = 139/245 (56.73%), Query Frame = 1
Query: 10 LVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERT--------------------RTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFD 684
LV+DEADML+EG Y R L+ ILV+F+RADK+ P TQYVLAAATLP+YGLKSV++ VK+ FP A ++ MHKHHP + Q F+E E + KI ++ +L T EA R +TMVF NTA + A+ GF V++HKEV +R NL+ +S +LVCTDLA+RG+D+P V ++VQ+E A NVV HL A NF+D
Sbjct: 345 LVVDEADMLLEGDYGRHLERILVAFKRADKLHTARSEP---LTQYVLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVLEKLRTKGEEARRAEGGKEXXXXXEGEAQATILPKTMVFLNTATAAARTQIAVQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDVRQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYD 586
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A7S4D991_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D991_HETAK)
HSP 1 Score: 167 bits (423), Expect = 1.790e-47
Identity = 99/220 (45.00%), Postives = 135/220 (61.36%), Query Frame = 1
Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQ-----------AEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLL--RGGDTS*SEAERT-RTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
+LV+DEADML++G Y QLD ++V+ +R ++ AE L R Q VLAAATLPTYGLKSVD YV++ F A ++ MH+HHP + Q+FIEVG + +KIEA++ L + + A T R MVF NT A+ + ALA EG +YHK+ P +R L ++G + +LVCTDLA+RG+DVP VT ++Q E A NVV HL
Sbjct: 50 ALVLDEADMLLDGGYLAQLDKVMVALKRVGRMAETARGRYQDAYAEGALYTPARCQRVLAAATLPTYGLKSVDAYVRKHFKGAARVGTGLMHRHHPRLHQDFIEVGGSLGEKIEALLAYLDEEAAEGRGAGAPGTMRAMVFCNTVAAAEEVAAALAAEGVPCAAYHKKTPPAEREGALARFRAGESPVLVCTDLAARGLDVPGVTHVLQAEFAPNVVQHL 269
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A7S2R527_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R527_9STRA)
HSP 1 Score: 153 bits (387), Expect = 1.160e-41
Identity = 103/257 (40.08%), Postives = 143/257 (55.64%), Query Frame = 1
Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTR-------------------TMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLTG 720
++V+DEADML++G Y Q+D+ILV+ +R +++ + TQ +L+AAT+PTYGLKSVD+ V + FP A +++ +H+ P ++ ++EV E + D+ E GG T S A R TMVFANTA + ACE L + G YHKEV R ENL SG ILVCTD+A+RGID+ V +VQ E A+NVV HL XXXXX AT+F D S+ ++ G
Sbjct: 22 AIVLDEADMLLDGGYLNQVDEILVARKRILRMRQQHEPVVDRHTQVILSAATIPTYGLKSVDKLVAKRFPNAARVENDLLHRTQPQLEHHWVEV-ESMGDERE-------GGATVGSRAFAARCLQLEELLRPATPSDPIPRTMVFANTATTAAAACEYLRKAGLPAAEYHKEVLVGIREENLGLFSSGQVPILVCTDMAARGIDIQGVQHVVQFEFASNVVQHLHRLGRTXXXXXQGTATHFVDPSSDLAERIRRG 270
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A7S1D4C6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4C6_CYCTE)
HSP 1 Score: 146 bits (369), Expect = 1.080e-38
Identity = 88/217 (40.55%), Postives = 128/217 (58.99%), Query Frame = 1
Query: 4 TSLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK--------SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
++LV+DEADML++G Y R L+D+++ FRRADK+ + +P RTQ V AATLP G++SVD Y+++ FP+A ++ MH KH+ ++ E D++ +V+LL T E + MVF N+ A AL G + V YH ++A RDR NL + +A +LVCTDLASRG+D+P VT +VQ++ A NVV HL
Sbjct: 52 STLVVDEADMLLDGGYIRPLEDVMIGFRRADKLDSSHDVP---RTQNVFVAATLPDMGVRSVDAYLQKKFPYAQRVAMAGMHNAKHYGLRERTLWIEEEENRDRMLRLVDLLNKPTTE-GGLEGEKVMVFLNSVDDVDGAYGALKRAGIAVVPYHAKIALRDRTANLDRFRRYGAAEPGEDAAAVLVCTDLASRGLDIPGVTAVVQLQFAGNVVSHL 264
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A0G4ESI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESI9_VITBC)
HSP 1 Score: 146 bits (369), Expect = 2.070e-37
Identity = 87/241 (36.10%), Postives = 138/241 (57.26%), Query Frame = 1
Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMHKHHPAIQQEFIEVGEHIS--DKIEAVVNLL---------RGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTK 696
+LV+DEAD+L++G YK+ L+ +L FRR+ + G P TQ+++ AATLP G SVD +++R FP A +++ MH+H P +QQ+FI +G S D++ +V+ + RGG+ + + +T++FANT S K AL + G V H ++ +R+ NL A + G + ILVCTDLA+RG+D+P + ++Q + A NVV HL X A NF+ ++
Sbjct: 230 TLVVDEADLLLDGGYKKDLEAVLTVFRRSGR----QGAP----TQHIMVAATLPNRGSGSVDAFLERRFPEALRVRNSLMHQHLPGMQQDFIPIGYDASTRDRLNMLVDKVTEMQRDRASRGGEEA---VDVGKTIIFANTVNSAKAVANALFDVGIPVVPCHADLRAAERISNLDAFRRGISSILVCTDLAARGLDIPRIATVIQFDFAPNVVAHLHRVGRAARAGXAGHAINFYGKDSE 459
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A1Z5JPU2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPU2_FISSO)
HSP 1 Score: 144 bits (364), Expect = 1.310e-36
Identity = 89/213 (41.78%), Postives = 132/213 (61.97%), Query Frame = 1
Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADK-IQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK----SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
SL++DEADML++G Y R L+ +L+ FRRAD+ I + P TQYV AATLP GL+SVD Y+K+ FP A I ++H KH ++ ++I + E ++++AVV +L +E + M+F N+ + A AL G S + YH ++ ++R E L+A + +G + ILVCTDLASRG+DVP VT ++Q++ ATNVV HL
Sbjct: 222 SLIVDEADMLLDGGYVRALEQVLMGFRRADRTIHSTEQRP----TQYVFVAATLPDSGLRSVDAYLKKKFPSAEYITTANLHNAKHEGLLETQWIAL-ESKQERMKAVVEMLSQHQQQ-QGSEGEKIMIFLNSVQDVENASAALQRAGVSVLRYHAKLNLQERTETLEAFRQSTANGQSSILVCTDLASRGLDVPDVTLVIQLQFATNVVTHL 428
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A1E7F9N5_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9N5_9STRA)
HSP 1 Score: 134 bits (336), Expect = 3.420e-34
Identity = 77/213 (36.15%), Postives = 127/213 (59.62%), Query Frame = 1
Query: 31 MLMEGSYKRQLDDILVSFRRADKIQAEMGLPGFERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLLRGGDTS*SEAERTR---TMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK----------SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
ML++G Y R L+++L+ F+RAD++ A++ + ++TQ+V AATLP GLKSVD Y+++ FP+A++I MH KH+ Q+ E +++E +V +L D ++ + + TMVF N+ + +AL + G + V YH +++ +R ENL + + +L+CTDLASRG+DVP VT +VQ++ + NVV HL
Sbjct: 1 MLLDGGYIRSLENVLMGFKRADRLSADLNV---KKTQHVFVAATLPDVGLKSVDAYLQKKFPYANRINTNDMHNAKHYGLSQETKWYQVETKKERMERLVEMLLSSDEDNADVDSLKGEKTMVFLNSVDDVESVHQALVQRGINAVPYHAKISLNERSENLDRFRRYDSDNNADAGDTVPVLICTDLASRGLDVPGVTAVVQLQFSGNVVSHL 210
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match:
A0A448ZNQ7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNQ7_9STRA)
HSP 1 Score: 138 bits (348), Expect = 5.080e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 1
Query: 7 SLVMDEADMLMEGSYKRQLDDILVSFRRADKI---QAEMGLPG-FERTQYVLAAATLPTYGLKSVDQYVKRAFPFAHKIQQVHMH--KHHPAIQQEFIEVGEHISDKIEAVVNLL--RGGDTS*SEAERTRTMVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAK-----------ILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 624
+LV+DEADML++G Y R L+++L+ FRRAD++ A+ PG +TQ++ AATLP GLKSV+ Y++R FP+A++I+ +MH KH+ + E +++E + LL + + + +TMVF N+ + +AL + G VSYH +++ +R ENL + S++ +LVCTDLASRG+DVP VT +VQ++ + NVV HL
Sbjct: 299 TLVVDEADMLLDGGYIRALENVLIGFRRADRLVDPSADPSDPGTIRKTQHIFCAATLPDVGLKSVNAYLERRFPYANRIETGNMHNAKHYGLSKATKWYQVETKKERMERLAELLVTERDENNEDGLKGEKTMVFLNSVDDVEGVHQALVQRGVDAVSYHAKISLNERSENLDRFRRFSSENEKDNDGDAVPVLVCTDLASRGLDVPGVTAVVQLQFSGNVVSHL 523
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.29e-96 / Id = 65.59 Expect = 6.68e-95 / Id = 65.99 Expect = 2.60e-48 / Id = 42.86 Expect = 1.79e-47 / Id = 45.00 Expect = 1.16e-41 / Id = 40.08 Expect = 1.08e-38 / Id = 40.55 Expect = 2.07e-37 / Id = 36.10 Expect = 1.31e-36 / Id = 41.78 Expect = 3.42e-34 / Id = 36.15 Expect = 5.08e-34 / Id = 38.22 Sequence A0A6H5KBP8_9PHAE D7FR69_ECTSI W7TS57_9STRA A0A7S4D991_HETAK A0A7S2R527_9STRA A0A7S1D4C6_CYCTE A0A0G4ESI9_VITBC A0A1Z5JPU2_FISSO A0A1E7F9N5_9STRA A0A448ZNQ7_9STRA Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 136.0 Seed ortholog evalue 1.2e-29 Seed eggNOG ortholog 2880.D7FR69 KEGG ko ko:K14806 GOs GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009507,GO:0009536,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 EggNOG free text desc. helicase activity EggNOG OGs COG0513@1,KOG0333@2759,KOG0348@2759 EC 3.6.4.13 COG Functional cat. JKL Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko01000,ko01009,ko03009 Hectar predicted targeting category other localisation Ec32 ortholog description DEAD box helicase Ec32 ortholog Ec-08_005190.1 Exons 7 Model size 729 Cds size 351 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815595.0327659-CDS-P-canaliculata_contig10216:4104..4221 1622815595.0327659-CDS-P-canaliculata_contig10216:4104..4221 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 4105..4221 - 1693494156.3230526-CDS-P-canaliculata_contig10216:4104..4221 1693494156.3230526-CDS-P-canaliculata_contig10216:4104..4221 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 4105..4221 - 1622815595.046099-CDS-P-canaliculata_contig10216:4602..4660 1622815595.046099-CDS-P-canaliculata_contig10216:4602..4660 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 4603..4660 - 1693494156.3402534-CDS-P-canaliculata_contig10216:4602..4660 1693494156.3402534-CDS-P-canaliculata_contig10216:4602..4660 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 4603..4660 - 1622815595.0575874-CDS-P-canaliculata_contig10216:7074..7217 1622815595.0575874-CDS-P-canaliculata_contig10216:7074..7217 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 7075..7217 - 1693494156.348459-CDS-P-canaliculata_contig10216:7074..7217 1693494156.348459-CDS-P-canaliculata_contig10216:7074..7217 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 7075..7217 - 1622815595.0709248-CDS-P-canaliculata_contig10216:9481..9514 1622815595.0709248-CDS-P-canaliculata_contig10216:9481..9514 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 9482..9514 - 1693494156.3563325-CDS-P-canaliculata_contig10216:9481..9514 1693494156.3563325-CDS-P-canaliculata_contig10216:9481..9514 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 9482..9514 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815595.0845287-UTR-P-canaliculata_contig10216:9514..9540 1622815595.0845287-UTR-P-canaliculata_contig10216:9514..9540 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 9515..9540 - 1693494156.3646784-UTR-P-canaliculata_contig10216:9514..9540 1693494156.3646784-UTR-P-canaliculata_contig10216:9514..9540 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 9515..9540 - 1622815595.0956798-UTR-P-canaliculata_contig10216:10268..10347 1622815595.0956798-UTR-P-canaliculata_contig10216:10268..10347 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 10269..10347 - 1693494156.373327-UTR-P-canaliculata_contig10216:10268..10347 1693494156.373327-UTR-P-canaliculata_contig10216:10268..10347 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 10269..10347 - 1622815595.105394-UTR-P-canaliculata_contig10216:10744..10872 1622815595.105394-UTR-P-canaliculata_contig10216:10744..10872 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 10745..10872 - 1693494156.3817813-UTR-P-canaliculata_contig10216:10744..10872 1693494156.3817813-UTR-P-canaliculata_contig10216:10744..10872 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 10745..10872 - 1622815595.1174815-UTR-P-canaliculata_contig10216:11470..11615 1622815595.1174815-UTR-P-canaliculata_contig10216:11470..11615 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 11471..11615 - 1693494156.3954616-UTR-P-canaliculata_contig10216:11470..11615 1693494156.3954616-UTR-P-canaliculata_contig10216:11470..11615 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 11471..11615 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10216.342.1
>prot_P-canaliculata_contig10216.342.1 ID=prot_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKI back to top mRNA from alignment at P-canaliculata_contig10216:4105..11615-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10216.342.1 ID=mRNA_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7511bp|location=Sequence derived from alignment at P-canaliculata_contig10216:4105..11615- (Pelvetia canaliculata dioecious)GCCACCTCCCTCGTAATGGACGAGGCCGACATGCTCATGGAAGGGAGCTA
CAAGAGGCAGCTGGATGATATCCTCGTGTCCTTCAGGCGAGCAGACAAGA
TCCAGGCGGAGATGGGGTTACCCGGCTTCGAGAGGACCCAGTACG GTGAT
CCGTCTCATTAAGGCTCTGCGGCCTGGACCGGGGGTGGATGGTTACAACA
TGCACCTAAAGCGATATTGAGGTTGATATCCTCCCCCGGAGGCTGAAAGT
TACGATTCCCTCGGGACTTAAAATTTGCCATCCTCTGGAGCTTAGAACTT
TCCATCCCCTCGGGACCTAGAACTTACCACACACACCCCGGAGCCTAGAA
TTTACCGTACCCCCGGGACCTTCAAGTTTTCATCCCCTCAGGGCCTGGGA
GCGTTACTGGGCGCCCCGGCAAACTTGGACTATGTACACCGTTTCCCCGT
TGGGATCCTGCGCACGTGGCTGGCCAATCCAGCAAAACGTGCCGTGCACC
TCATATCAGAAAATTTGATACCGAAAACTGTGTAGACAGGGGGGGCGGGG
GTAATGAAAAAAAATAATGTTCCGCGGTTCACCTGCTCTAAATATATATT
GAATTTTCTTGGCATGTACACTTCACGACACGATATTGTGCCCCCTCTAC
TCCCCCTGTCCTGCCCCCTCCTCCTCCGGGGCCGTTTTTCCTCTGTGGAA
ACCCCGCTGCTGGTGTTTATATATAATATGTGTGTATATGAAGTGCTGGC
GGCGGCGACCTTGCCTACGTACGGCCTGAAGTCAGTGGACCAGTACGTCA
AGAGGGCATTCCCCTTCGCCCACAAGATTCAACAAGTCCACATGCACAAG
CACCACCCCGCCATCCAGCAG GTGGGCTGTAATACCTTTTTCGCTTTGTA
GGGGGAGCGTTCTGCAGCAGAAATGGTTTAACAAACTTTGTTAACACGCG
CGTTGGGCGTCTATCTGATCTGGTACTAGATACTAAAGCAGTTTTTTTTT
TTTTTGGGGGGGGGGGGTAAAGACCAGTTGTTGGTCGGATGTACCCGCAT
TTAATGTCCCAACAAAAATATAACTTAGAGACCTCGAGAGATTTAGTGCG
GCGGATGGCAGACTGGCGATGGCGGATGCGGAGCTGCTTTGGTTGGTTTC
CGTTTCCTACATATTTACCCCCACTGACAAACGCCTCCGCCATGGCGTTC
GTCTTCTCCCCACACTATATATACGACACACATATATGTATACATATGCC
ATCTCTGGCGTCCCTCAGGAGTTCATAGAAGTTGGGGAGCATATTTCGGA
CAAGATCGAAGCTGTGGTCAACCTGCTCCGCGGAGGTGACACGTCTT GTT
TAGCTTTCAGCAGTAGGTTACCAGTCTTCATTTCGTGGTGCGGAGTATAT
TTTGTACGGTATCATTCGATTTGTGTTTTTACCTGTTACTGCTGTTGGAT
TTCGAGGCACTCTTGAACTATATTGTGGTGTCTTGCTTACCCTCCTGCCA
TTGTTGTTTGATGATCGAATGTTGTTGTTGGTGGTGGTGGTGGTGTTTTT
GCCCAGAGCGATTGTTTTGTTGTTTTAGATAGTTTTTTATCGGGTTTTCC
CTTGTCGGTGGAGCATTTTGTTGGATTTTTTCGCCCTTGGTAAGTGTAAA
GGTGTGCGTTCCTGTACACCCGAAGTGAAATCGATACATACCAGGTTTGT
AGTAAACGGGCAGAATGGGCAGAATGAGCGGATTAGGGGTTAGCACCGAC
CGCGGCAAACCTGGACTGGACCTCGGATGTCATAATGCCATGGCTTGCGA
CAAATGACATAACACGATATGGCACATGACATGGCCCATGATGTGACACA
TAATATGACACATGACATCACGCATGAAATGACACATGATATGACACATG
ACATCACCTATGACATGGCATGACATGCCACATATGGTATTAACCATTAC
GTCCACATATGGTATTAACCATTACGTGACTTATGACATAAAATGATAAT
GACACATAGCATGACACACACACGACATTGCATGTCATGACGCCATATCT
TGTCCTCGTTGGTCCTCTGTTCCAGAGAGCGAGGCGGAAAGGACTAGGAC
G ATGGTATTCGCCAACACCGCTGCCTCGTGTAAG GTAAGGTTCGTAACAG
GAAACCTTGTGTGTGTGTGTGTGTGTTTATTAAATTGCACATGAACGCGC
AATCCGGCCCTGTAATCTAATCATTCTATGCTACTGCATGTAACCCACAT
GGGGGTTACTTATCGTAAACATATTCTTGGCTAGAAATGCGCGTATACAG
CTACAACTCCTCTCCCCACTACGAAGGCTCTCGGCCGGAACCTCACTCCA
TCGACATCAACTACAACGCTCTGTCCGGAGAAAAACATGAGACCGAAAAC
GCGGAAAATGGTGGACAGGCTTGTCCCCCTCTAACACACGGGTAAAGCTA
GTTGCTCGCCGCTTGGCGCAACAAATAGAGACGGGAATCCGGCAAACGGA
CCACCACGGCCAACTATCCTTGTAACCTTCCCCTCCAAACCCAACAGTTC
CGCCCCCCCCGTCAAACCGTGCAACGTACTGCAGCAGTGGTGTCATCATT
CCTCCCCCTTCCCCTTTCAGCACCCAATCGGTGCGTGTCCCGACTACACC
CGCACATTTTTCTTTCTACGTTAGAAAATCCCCCCCAGCCATAGGGCCCG
GGGTGGAACACCAACCGTAAGTCTTGCACTGGGCGCTAATCGTGAGGGCA
AGGAAAGAGTCAAGGTTAAAGCTAGTCGGAAACAAAGAAGCCGAATAGGG
TCTGCGCTCGTATGTATATGCCGGAACGTACAACATCGTGAGCGAAAACT
CCCCAAATCCACGAGAAATGCGCTCATTACTGCCGTCACGGTTGCTGTTG
TGCGTGTGTGTGTAATCCGGCCCTGTCATCCTTGTCGTTCTGTGCTACTC
GCCTTGGTCCTCCCAAGGGGTGTTAAGGGATCAATGATACTCCGATACTT
ATTACGAAAACCTCTGATCAGACGCGACAAAGGGGACACACTCTTTAATT
TTCTATCTTCAGTTGCTATCATTGTTATTAAGGAGGAGACACACGCCTTG
CGCCTCCCTCTATTATTTTTTGCCATTCTCTTCTCTAGATGTGTATCCTC
GGCCGACATCTACTGAACTCTCTTGTCTACGTTTTTTTACCTCCTACCGC
TAAAGTCTCCCCTGTGTGTGTGTGTGTAGCTGTATATATTTGAGTCAACA
TACCATGGTATATTGTTTTAGCGCTCAGTACTGGCTAGAGGTTGTTTATG
TAGTGACTGTTTGAACGTCGAGAGACTCCCGTGGTGTAGTGGGGTGTATC
GATACACAGTAGCTCTACACTACAATACCGGGGTAATATCAACTACCGGG
GTAATATCATCTACGGTAGAACTCAAAACGTAGACAAAAGCGGCCCCACT
TCATGTGCGTGGAAGTATGGCGTAGCCTTCTCATACTTGGAAGTGCTACT
AATAGTATTACATTACACCAGACTATTTTGAGCACAGGAAAACAATACTG
ATAATACTAAAGCGAAAAGCGTCAGACGACTCCCAAAAAGAATAACCGTT
ACAAAAACAGGACAGGTCTGTTATACAGTGTCGCCCGTATTGTGTTAAAT
GCTATGACACCTGGTATTTATTACTATTTATTACTATTATAGCGCTGACA
CGGCACCACTGTGTGGAGTGCCAAGAAGTGTGCTATTAATAGTATTAGTA
ATAGCACTGTAGGGAGGCATCAAGAGGGAAAGTAACGCCTTCTTTCTCCG
TTACTGGTACAATACAACAAGACGAACCAAGACAATGGACTTATCTTCCC
CCTTGAGATACATAAACATATTGTGGACGCCATCGCGGAAAGCTGGAGGA
ACCCCATAAGTAAGCGCCAGGTTCAGACCATTAGTATTAATAGAGACTGG
AGAATGAGCGGGCTGACGCAGGGCGGGACGGCCGAACCCCTCTCGCGAGA
CTTAGCTCTAGGGCGCGAACGCGGACAGGAAAAAAAATGTTTCCCCTGTT
CAGCTTGACGACGAGCAGGATTGGCAGCCATGCCCGGTTGATCCTTCCCG
TGCCGAAAGTACTGACCAGACATGCATACACGTAATGGCTGTAGAGAGTC
GTGTATCTTCGTTGTCGCGTACTTCCAGAGGTTTTCGTAACGAGAGCAAT
CAGTGATCCCCATTCGGAGGACCAAATACGAGTAGCGTAGAATAATGAGC
AAGACAGGGCTGGATTGCGAGGCTGTGCGCAATTTCATACTACACTCATA
TACACTTACCCTCAACCTTACGCTTACTACTTACGCTTACGCCTACACTT
ACGCTTACACTTACGCTTACCCGTACACTCAAAAACGTTTCTCCGCAGCT
GGCGTGCGAGGCTCTCGCCGAGGAAGGGTTCTCCTTCGTATCATACCACA
AGGAAGTGGCTCCCAGGGATCGCCTGGAGAATCTGAAGGCTCTCAAGAGC
GGGAGTGCCAAGATCCTCGTCTGCACCGACCTCGCCTCAAG GTACCTCTT
GCTTTTGTGTGATACACTAATGAGGAATGAGGGACCAGTCCAAATCGTTG
TACGAGTTACTCTGCCGGTAAGTCCACCGCCAGTCGGTGTTCGTCCACTA
TCGATCGGTATCAATGCACTACAAAATCGATATGAGTGCACCACGATCGG
TTGTCAAGATTCTCTCCCTCGTACGTTTTTTTAACGTTTTTATTTTATTT
TTGATTCGCACTTTCAGTGTATAGCCCTTGCAGCTGAAGACTACGGCGGC
ATATACAGTCAGCCCTAACCTATCAAACGTAAATCCCGATTGTGGTATTA
TAGAGGTGCGAAGGTCAACGGGTCACGTTATGGTGGGATCCAGCTATATT
TACAGGACTCAAACCAAAAGGGTTCCCAAATTTCGACAAAATCATCGTGC
GGCATAGCTAACCGAAAATCAGCTGAAACATCATATCCGCGTCACGACCA
AGCTCTTGGGGTATTACTGATAGTAACAATTACATTACAAGCCACAGAGA
ACACCGCTGTCTGATGTGCTGCTCATTTTACCAAGCCATGATCGAAAAGT
GGCTGCTGTACTACCGACACACAGCAGAGGAAGTTCCAGTGCTATCGCTA
AGTTACACACAGGAAATGCGACACTCCACAAGAAAAGACACCGACCAAAG
AAAATTCAGTCAATCAAATCTCCTTTTTCGACACCGAGCGTAACTCTGAT
CAACTTGGGCTGATGTTGCCCACCCACATCCAGCGTTATCAGCAACAAAA
CGGACAAATCATTATGTGTTGTACCGAGGTCTAAGGTAATGAAAACCTTG
CTGATCTGTGAAGACGGCGCCCGAGCCAACACCCGCCTGTCGAAAGCCCG
ATGTCCCCTTGGAAAGCGCCCCAAAAGTCTTACCCGTTCGCCGCTCCGGG
TTGGCTCCCGTAGGAAAAAATTAGTCCGTAGCGAGAAATAAGCCCGCTCT
CGAAAAACTCGCCTGTAATATTTGCGCACAAGGGTTCAGCACTCTCTTGG
CTCGTCGACGACCAAGCTACCCTCCACTCTAGCCGAATGTGGTTTTCACT
CACCAAAAAAGTTCGTGCAGTAACACGCTTGCGCGTGCTGCGAGCACCCT
GTCAGGCTTGCCGCGACAGTATCACCTGCCTCTCGCTTGCCACGCCCCGT
TCCCACGGACACCAAATTGGCGTTCGGGAGAGGCGTGCCTGGTAAAACTA
TCCTGACATCAGCAAACTGCCACCGCGTAACAACCAATCGGCTAAGTCAA
GTTGACAGCCAGTTGGTGTCACCTCTCGGGAGTGAGTCCAACCTCACATC
CGCCGGAATGATCCTCCCCCCCCCCCCCCAACATATACCCGAAAACCAGG
TTTTGGGCATGGAGAGCACGAGTATAAATCGGCTGTCAAGATTCAAAATA
CGGCCGTTTCGATGTGGTTGATGACAGTCGGTTGTATCCAACTTGTGTAC
GAGTGCTGTTGTAGAAAATGGGCTTCCGTTCCTGCCCTGGTAAGATGTTG
AGTGAAAAACCTCGGGTCCGTGGAGAAAATACCCCCATAATTTTGACCAC
CTTTTGACAACCTTTGAGTTTTGCATTCTGGCTTTTAAAGCGCCCGATCA
TCTAGGTGCGAGTATGGCCGTGCTTTTTTCTCTCTCTTGTTTGAAGGCCT
TGTTCGTTTCTCTTAAAACAATAATTTTTCATTTTCCGCTGGCGGTTGAC
GGCAGGGAGGGGGTTAGCTCCAGCCAGCTCCAGCTCTACGGTGGGCTCTA
TTGCTTCCGCATTTTGTTGTTGTTATTTTCTGCTTTGTAGACAGACTGCT
GTGTGGATCACCGATGGGTAGACAGACTACTGCTGCATCACACGATGGAG
AGGGCTGTGGAGACGTCTTTGTGTGAAGACCCGTGCGTGGGCTGTATATA
TTATGACTGTTTAGACTGCTGCGTGCAGTAACACTCTTGGCTGTTGATAA
ACTGGTGAAGCGTACGTACTTGAAAAATACTGCTGAAATTTGTATGTGCT
ACTGGTAAAAGAGTACCGTATGTGCTGCTGTAAAGTCTCTAGGATACGGC
GAAGACTTGTTGTATACTGGTATATACTACTGGATGCACTAGCGACATCT
TGGGGGGGGGGGGGGGGAAAGGGAGGCTGATCCCCGCGCGCGTTCCGTGT
CGAAATAATCGTCTCTGGATGACTCTTAATCGTTGTGAAAGTAGGTAAGC
TCCGACATGGCCAAAAAAGAGCATGGCGTACCTTCCCAGTCCTTGTGTTG
CAATACTATTTAATAGAAAAATCACTATAATACTGGTACTTGGCGCTGAA
CGAATCTGAAATATTTCTGTCAGGCTAATGTCCCCCCGTGTAAAATTACT
GCCGCGCACCTAATCGAAAGAAGCTGCTGCCTTTTTTATGTGTCCTGAAT
TACAGGGGAATCGACGTGCCCTCGGTGACGCGCATCGTACAGATGGAAAT
GGCCACCAACGTG GTGAGTCGGCGTGAGACACGGGACGCGAACAGAGCAG
CGCCCACTTCCGACTGCCATGTTGGAGAGAGGAAATAAGACGGCGCTCGA
GCGAAACAATTTCCGATCCCCCCCCCCGCCCCCCCCCCTCCCCTCTTGAA
CCCCCTATTATTTATAGCATTATTACTGCTGTTTGCCAGTTGGTTATCGA
TTGAATTTGATAGTCCTATTGTGAGTATGATGACTGAGATGCTACTGCTG
CAGGTGTGACGCGCGTGTGGTTGCTTCCCCGCCCCGAAGAGTACGAAGAC
TTGTTCACTCCCCGCTTAACAAACGCCTCTTTTTGCGGCTGGCGTGGGTA
GTCAAAGCGTGAAGCCGCCGCTCGTTTTTTTTTTTCTCTGTAAGGTGCAT
CATCTGCATCGACTGGGGCGGGCGGCAAGGGCCGGGAGAACTGGGAGAGC
CACCAACTTTTTCGACAGCTCCACCAAGGCAAGCAAGGAATGCCTGACCG
GCCCCATGTAA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10216:4105..11615-
>mRNA_P-canaliculata_contig10216.342.1 ID=mRNA_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig10216:4105..11615- (Pelvetia canaliculata dioecious) back to top