Homology
BLAST of mRNA_P-canaliculata_contig10216.341.1 vs. uniprot
Match:
D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)
HSP 1 Score: 142 bits (357), Expect = 6.520e-32
Identity = 68/88 (77.27%), Postives = 79/88 (89.77%), Query Frame = 2
Query: 2 RMRSFSAPKSFDVRRRRAEAAGALRRFVGDAWDASGGDLNALWASTRHLKETVDTELLPAARLMTGEWKAEAALRALLYRFMEDRRGQ 265
RMR+F APKSF++RR R EA+GALRRFVGDAWDASGGD +ALWAS+RHLKE VDT+LLP ARL+TGEW+AEAALR+LL RFM+DR Q
Sbjct: 396 RMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQDREQQ 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10216.341.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.52e-32 / Id = 77.27 Sequence D7FR72_ECTSI
Match Name E-value Identity Description
D7FR72_ECTSI 6.520e-32 77.27 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 141.7 Seed ortholog evalue 2.8e-31 Seed eggNOG ortholog 2880.D7FR72 Preferred name RAD17 KEGG ko ko:K06662 KEGG Pathway ko04111,ko04113,map04111,map04113 GOs GO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006282,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0010972,GO:0016043,GO:0017076,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031389,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0035825,GO:0036094,GO:0042325,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051174,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2001020 EggNOG free text desc. mitotic DNA replication checkpoint EggNOG OGs COG0470@1,KOG1970@2759 COG Functional cat. L Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko03400 Hectar predicted targeting category other localisation Exons 2 Model size 2137 Cds size 468 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815594.9615881-UTR-P-canaliculata_contig10216:555..559 1622815594.9615881-UTR-P-canaliculata_contig10216:555..559 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 556..559 + 1693494156.2643592-UTR-P-canaliculata_contig10216:555..559 1693494156.2643592-UTR-P-canaliculata_contig10216:555..559 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 556..559 + 1622815594.999095-UTR-P-canaliculata_contig10216:1258..2923 1622815594.999095-UTR-P-canaliculata_contig10216:1258..2923 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 1259..2923 + 1693494156.3066869-UTR-P-canaliculata_contig10216:1258..2923 1693494156.3066869-UTR-P-canaliculata_contig10216:1258..2923 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10216 1259..2923 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815594.9737654-CDS-P-canaliculata_contig10216:559..741 1622815594.9737654-CDS-P-canaliculata_contig10216:559..741 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 560..741 + 1693494156.2792666-CDS-P-canaliculata_contig10216:559..741 1693494156.2792666-CDS-P-canaliculata_contig10216:559..741 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 560..741 + 1622815594.9848654-CDS-P-canaliculata_contig10216:972..1258 1622815594.9848654-CDS-P-canaliculata_contig10216:972..1258 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 973..1258 + 1693494156.2875075-CDS-P-canaliculata_contig10216:972..1258 1693494156.2875075-CDS-P-canaliculata_contig10216:972..1258 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10216 973..1258 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10216.341.1
>prot_P-canaliculata_contig10216.341.1 ID=prot_P-canaliculata_contig10216.341.1|Name=mRNA_P-canaliculata_contig10216.341.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=156bp
MRSFSAPKSFDVRRRRAEAAGALRRFVGDAWDASGGDLNALWASTRHLKE back to top mRNA from alignment at P-canaliculata_contig10216:556..2923+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10216.341.1 ID=mRNA_P-canaliculata_contig10216.341.1|Name=mRNA_P-canaliculata_contig10216.341.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2368bp|location=Sequence derived from alignment at P-canaliculata_contig10216:556..2923+ (Pelvetia canaliculata dioecious)CAGG ATGCGGTCTTTCTCCGCCCCCAAGTCGTTCGACGTGCGCCGCCGTC
GGGCGGAGGCCGCCGGAGCCCTTCGACGCTTCGTTGGAGACGCCTGGGAT
GCCTCGGGCGGGGACCTGAATGCCCTCTGGGCTTCGACCAGACACCTCAA
GGAGACGGTCGACACCGAGCTGCTGCCCGCGGCAAG GTCTGGGGGTTGTG
TGTGTCCGAACTGTGTGCTATGCGTGTACCATGTGGGTGCGCGTTCGTCC
GTATTGATCGATTGGCCTCGAAACGTGATGAATATTGATGAGTGATCCGA
GGAATATTTGATGAATATCGATGAGTGATCCGAGGAATTTTTGATGAATA
TTGATGAGTGATCCAAGGAATATTTGATGAATTTTGATGAGTGATTGTTG
GTTGTCATTTGGAACAGGCTCATGACAGGGGAGTGGAAAGCAGAGGCAGC
ACTCCGCGCTCTGCTATACCGCTTCATGGAGGACCGACGCGGACAAGATC
TAGAGCTGCATGGACAACCACTAGGGCAAGGGCATGGACATATTTCGCTA
CCGAGCCATTCGGGGAACATCGCGACCATGTCAGCGGTTAGCGCCTCGTC
GCTCTCTCCTCCTTGTGCCCCTGACGCGAAAGGCCTCGGTGTCCGGCAAG
ACGACGGCATCGAGGACATCGAGGAAGACGAGGTGGAAGATGAAGAGTTT
TGA GCGTCGACGCTGGTTAAACGGGAGATAATTTTTCTTGCGGCGAAAGC
CCTGTTTCCTTTTCAATTTTTTTTTTTCTAATGGGTTAGGGGCTAATTTT
ATTTCATTTTATTAATGGTTGTTGGGACTTTTTTTCAAGGGAAATTGAGA
GAAATAACCGTGACGGGGCGAGGGCTTTGTATCAATAGAGATGAGGCAGG
AGTTATAGCATAAAGCGGCATGTTTTTTTCCGCTACTTTTTTGTGTGCGA
GGGTTTTCGACGTGATTTCTTGGGCGTACTTTTGTCGCTATCAGGCGAAG
GGTGTAGGCAGATTTTTAGGGCACTCTTTATTGCGCGATAGAGATGCGGC
AGGAGTTAAGCATAAAGCGGCATGTTGCACCTTTCTTGTGTGCAAGGGTT
TTCGACGTGATTTCTTGGGCGTGCTTTTGTCGCTATCAGGCGAAGGATGT
GGGCATCTCTCTTGGGCACTCCCTTTTGCGCGGGGCTGGAGTTTTGTTCT
CATTGGCGGGAAGAAAACGTGAGGATTCATTTGATTGACTGGCGCGTCCG
CGTTCGCGAGTGCCCACGTGTCATGGGATCCGTCTGAGCCACGTACGTGT
GTCGGGTGGGTATCCATCGAAGGCATCAGGACATTTTTTACTGGGAAAGC
GGTTGCTGATGGAGATAAGCGATGTGCGTACGAGTAATGACCGTGAAAGC
GATAACATACTCCGCCCGCGTCCAAAGAGCGGACCACACGGGTATCGAGA
GTGTTTTTTTCAAAACCTCGCTGTGATCGATTGAAAAGTCTTTCACGAGA
GTATGAAGCACGTCGTGGGAAAAAAAAGAAGAAAAAAAAAAGCAACCGGC
ACTTTTTTTTCTTTTTCTTTTTAATACGGACGAGTACGTGCGTTACCTTC
GTAAAAATAGCCCCTCTGATTTGCTGTGGCGGGTGCTTGGGATGCCTATT
ACATGCCCACAGCTGCAATGTTGTAGTGCCTCTATTATATATTGTGCCTA
ATTGATAGAAGGCGGGAATAATGCCTCAGTTTTCGCTCTCAGGTTGCATG
ATCCGGCAGTCGGAGATCGTAAGGGAGTGTTTGAGGAAAGTCCGTCAAGG
TTCACCTTATCCCGTACCTGACGGACGTCAGGTCAGCAGGGGTCGAAATC
CCCCCACATCGACTTGTTTTCTGGGTAAAAATACGTGCGGGCCTCTGACC
CTGAAACCCGGGGACGGCTGTGTGTCCCCGATCACTCATCTCTTGATTTC
AGAGTTTGAAAATATGTGGGTTTTGCACTCAGTATGGACGTGCGTGTGAT
ACTCGTGCAGCGGCATACCTCAACTCTTTTCTCGCGGCGTTATCGTAGAG
GGGTGAACCGCACCTACTTGAATGCCCGGTGTATGTAAATAATAAAGTAT
ACATATCGGTTTGTGTGAGAGCGGAAAAACACTCCAAACTCATAAAAAGA
CGTCAGGTTACAACACAACTGTTGCTGTTTTGAGCTTGCGGATGAACTCG
CATACCCGGTATCGATAGTGCCATCATGTACTTGGACATGATCGCGTGTT
TTTTAGACGAAAGAGTAAAATTCACGGTCGGTGATATAGAGTGCAGGAAA
TGTGCCCACGTTGAGTGATCGGAGTTACGCCTCCATAAACCTCCAAAGAA
GTAATAATGAAATCATAG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10216:556..2923+
>mRNA_P-canaliculata_contig10216.341.1 ID=mRNA_P-canaliculata_contig10216.341.1|Name=mRNA_P-canaliculata_contig10216.341.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at P-canaliculata_contig10216:556..2923+ (Pelvetia canaliculata dioecious) back to top