prot_P-canaliculata_contig10216.341.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10216.341.1
Unique Nameprot_P-canaliculata_contig10216.341.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length156
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10216.341.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 5.740e-36
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 0 
Query:    1 MRSFSAPKSFDVRRRRAEAAGALRRFVGDAWDASGGDLNALWASTRHLKETVDTELLPAARLMTGEWKAEAALRALLYRFMEDRRGQ 87
            MR+F APKSF++RR R EA+GALRRFVGDAWDASGGD +ALWAS+RHLKE VDT+LLP ARL+TGEW+AEAALR+LL RFM+DR  Q
Sbjct:  397 MRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQDREQQ 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10216.341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR72_ECTSI5.740e-3677.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10216contigP-canaliculata_contig10216:560..1258 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10216.341.1mRNA_P-canaliculata_contig10216.341.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10216 556..2923 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10216.341.1 ID=prot_P-canaliculata_contig10216.341.1|Name=mRNA_P-canaliculata_contig10216.341.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=156bp
MRSFSAPKSFDVRRRRAEAAGALRRFVGDAWDASGGDLNALWASTRHLKE
TVDTELLPAARLMTGEWKAEAALRALLYRFMEDRRGQDLELHGQPLGQGH
GHISLPSHSGNIATMSAVSASSLSPPCAPDAKGLGVRQDDGIEDIEEDEV
EDEEF*
back to top