Homology
BLAST of mRNA_P-canaliculata_contig102.303.1 vs. uniprot
Match:
UPI0004E9D82F (Pre-rRNA-processing protein ESF2 n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI0004E9D82F)
HSP 1 Score: 51.2 bits (121), Expect = 2.960e-5
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 58 MSARKRNEYLEGYESEDDNANGYDSEAVEDSRT--GHGSKRRRVEADSSDEETLHDGGGVVVVKESRHLGTTDKN 276
MS RKRNE+LEG E+E++ NGYDSEA E G G+KRR+V+A S D + G V VKE G K+
Sbjct: 1 MSTRKRNEFLEGDETEEEIENGYDSEAEEGRGALGGRGNKRRKVDATSDDSD-----GDVENVKEPPKAGAIVKD 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102.303.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.96e-5 / Id = 48.00 Sequence UPI0004E9D82F
Match Name E-value Identity Description
UPI0004E9D82F 2.960e-5 48.00 Pre-rRNA-processing protein ESF2 n=1 Tax=Passalora... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 313 Cds size 312 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815592.7441492-CDS-P-canaliculata_contig102:36334..36646 1622815592.7441492-CDS-P-canaliculata_contig102:36334..36646 Pelvetia canaliculata dioecious CDS P-canaliculata_contig102 36335..36646 + 1693494155.219181-CDS-P-canaliculata_contig102:36334..36646 1693494155.219181-CDS-P-canaliculata_contig102:36334..36646 Pelvetia canaliculata dioecious CDS P-canaliculata_contig102 36335..36646 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102.303.1
>prot_P-canaliculata_contig102.303.1 ID=prot_P-canaliculata_contig102.303.1|Name=mRNA_P-canaliculata_contig102.303.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=104bp
AQTSDLGPVVQHFHHISNTMSARKRNEYLEGYESEDDNANGYDSEAVEDS back to top mRNA from alignment at P-canaliculata_contig102:36335..36646+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102.303.1 ID=mRNA_P-canaliculata_contig102.303.1|Name=mRNA_P-canaliculata_contig102.303.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at P-canaliculata_contig102:36335..36646+ (Pelvetia canaliculata dioecious)GCTCAAACAAGTGACCTTGGGCCGGTCGTCCAACACTTCCATCACATATC
AAACACAATGTCAGCACGCAAACGCAACGAATATCTGGAAGGGTACGAAA
GCGAGGACGATAACGCAAACGGATACGACTCGGAAGCGGTCGAGGACAGT
CGAACGGGCCATGGCAGCAAACGAAGAAGAGTCGAGGCCGACAGCTCTGA
TGAAGAAACCCTCCACGACGGCGGGGGTGTGGTGGTGGTCAAGGAAAGCC
GGCACCTTGGAACGACCGACAAGAACCCGCAAGAGTCGCAACCGGCCGAG
CAGATGGGCGCC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102:36335..36646+
>mRNA_P-canaliculata_contig102.303.1 ID=mRNA_P-canaliculata_contig102.303.1|Name=mRNA_P-canaliculata_contig102.303.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at P-canaliculata_contig102:36335..36646+ (Pelvetia canaliculata dioecious) back to top