mRNA_P-canaliculata_contig101995.293.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101995.293.1
Unique NamemRNA_P-canaliculata_contig101995.293.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101995.293.1 vs. uniprot
Match: A0A2U1KKC3_ARTAN (NB-ARC domains-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KKC3_ARTAN)

HSP 1 Score: 55.8 bits (133), Expect = 9.320e-6
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  223 LNLSYVTFFGCNGLTNL------DSLGKITSLEELSIQNCNGIKELNLNDWNAKNLQEIRIENCPELVTISGPTQGSGSCSLIISDC-CALEKIMLQHDSSLGYISNISITNCTNLNSI 558
            +NL  +  +GC+ L +L      D   ++TSL +L +++C  ++  NL      N+QE+ I++CP + ++S PT G    SL + +C   LEK +L + S    + ++ I    NL SI
Sbjct:  964 VNLRKLDVYGCSKLVSLGEKQEEDGCNQLTSLRDLELRSCENLERCNL----PNNIQELSIDSCPLIASVSFPTGGHKLKSLQLDNCEQLLEKEVLLNTSMPPMLESVHIARWKNLKSI 1078
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101995.293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2U1KKC3_ARTAN9.320e-631.09NB-ARC domains-containing protein n=1 Tax=Artemisi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101995contigP-canaliculata_contig101995:295..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.0865855-CDS-P-canaliculata_contig101995:294..8611622815592.0865855-CDS-P-canaliculata_contig101995:294..861Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101995 295..861 +
1693494154.8561678-CDS-P-canaliculata_contig101995:294..8611693494154.8561678-CDS-P-canaliculata_contig101995:294..861Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101995 295..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101995.293.1prot_P-canaliculata_contig101995.293.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101995 295..861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101995.293.1

>prot_P-canaliculata_contig101995.293.1 ID=prot_P-canaliculata_contig101995.293.1|Name=mRNA_P-canaliculata_contig101995.293.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=189bp
DLVLARIEAVQLTAEIKTLDDCRDHLNQLTHLKSILIFSNELENVDALQH
LEGLERVSFRGNSRSWSNIDALSDLNLSYVTFFGCNGLTNLDSLGKITSL
EELSIQNCNGIKELNLNDWNAKNLQEIRIENCPELVTISGPTQGSGSCSL
IISDCCALEKIMLQHDSSLGYISNISITNCTNLNSIGVQ
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mRNA from alignment at P-canaliculata_contig101995:295..861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101995.293.1 ID=mRNA_P-canaliculata_contig101995.293.1|Name=mRNA_P-canaliculata_contig101995.293.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at P-canaliculata_contig101995:295..861+ (Pelvetia canaliculata dioecious)
GATCTGGTGCTGGCCAGAATCGAAGCCGTTCAGCTTACTGCCGAAATAAA
AACACTGGATGACTGTCGCGATCACCTGAACCAACTAACTCACCTAAAGT
CAATTTTAATTTTCTCCAACGAGCTTGAGAACGTCGACGCGTTGCAGCAC
CTTGAGGGGTTAGAGAGAGTTAGTTTTCGGGGCAACTCGCGTAGTTGGAG
TAATATTGATGCGTTGTCTGATTTAAATCTTTCTTATGTCACATTCTTTG
GTTGCAATGGCTTAACAAATTTGGATTCGCTCGGAAAGATTACATCCTTG
GAAGAACTATCGATACAAAACTGCAACGGAATTAAAGAACTTAATTTAAA
CGACTGGAACGCGAAAAACCTCCAGGAAATTAGAATTGAAAACTGCCCTG
AACTCGTCACAATCAGCGGACCCACACAGGGCAGTGGAAGTTGCTCTTTA
ATTATTTCGGACTGTTGCGCCCTTGAGAAGATCATGCTTCAGCATGACTC
AAGCCTCGGCTACATCTCCAATATCTCGATCACCAACTGCACCAACCTTA
ATTCAATCGGCGTTCAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101995:295..861+

>mRNA_P-canaliculata_contig101995.293.1 ID=mRNA_P-canaliculata_contig101995.293.1|Name=mRNA_P-canaliculata_contig101995.293.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at P-canaliculata_contig101995:295..861+ (Pelvetia canaliculata dioecious)
GATCTGGTGCTGGCCAGAATCGAAGCCGTTCAGCTTACTGCCGAAATAAA
AACACTGGATGACTGTCGCGATCACCTGAACCAACTAACTCACCTAAAGT
CAATTTTAATTTTCTCCAACGAGCTTGAGAACGTCGACGCGTTGCAGCAC
CTTGAGGGGTTAGAGAGAGTTAGTTTTCGGGGCAACTCGCGTAGTTGGAG
TAATATTGATGCGTTGTCTGATTTAAATCTTTCTTATGTCACATTCTTTG
GTTGCAATGGCTTAACAAATTTGGATTCGCTCGGAAAGATTACATCCTTG
GAAGAACTATCGATACAAAACTGCAACGGAATTAAAGAACTTAATTTAAA
CGACTGGAACGCGAAAAACCTCCAGGAAATTAGAATTGAAAACTGCCCTG
AACTCGTCACAATCAGCGGACCCACACAGGGCAGTGGAAGTTGCTCTTTA
ATTATTTCGGACTGTTGCGCCCTTGAGAAGATCATGCTTCAGCATGACTC
AAGCCTCGGCTACATCTCCAATATCTCGATCACCAACTGCACCAACCTTA
ATTCAATCGGCGTTCAGGATCTGGTGCTGGCCAGAATCGAAGCCGTTCAG
CTTACTGCCGAAATAAAAACACTGGATGACTGTCGCGATCACCTGAACCA
ACTAACTCACCTAAAGTCAATTTTAATTTTCTCCAACGAGCTTGAGAACG
TCGACGCGTTGCAGCACCTTGAGGGGTTAGAGAGAGTTAGTTTTCGGGGC
AACTCGCGTAGTTGGAGTAATATTGATGCGTTGTCTGATTTAAATCTTTC
TTATGTCACATTCTTTGGTTGCAATGGCTTAACAAATTTGGATTCGCTCG
GAAAGATTACATCCTTGGAAGAACTATCGATACAAAACTGCAACGGAATT
AAAGAACTTAATTTAAACGACTGGAACGCGAAAAACCTCCAGGAAATTAG
AATTGAAAACTGCCCTGAACTCGTCACAATCAGCGGACCCACACAGGGCA
GTGGAAGTTGCTCTTTAATTATTTCGGACTGTTGCGCCCTTGAGAAGATC
ATGCTTCAGCATGACTCAAGCCTCGGCTACATCTCCAATATCTCGATCAC
CAACTGCACCAACCTTAATTCAATCGGCGTTCAG
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