prot_P-canaliculata_contig101995.293.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig101995.293.1
Unique Nameprot_P-canaliculata_contig101995.293.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length189
Homology
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BLAST of mRNA_P-canaliculata_contig101995.293.1 vs. uniprot
Match: A0A2U1KKC3_ARTAN (NB-ARC domains-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KKC3_ARTAN)

HSP 1 Score: 55.8 bits (133), Expect = 9.320e-6
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 0 
Query:   75 LNLSYVTFFGCNGLTNL------DSLGKITSLEELSIQNCNGIKELNLNDWNAKNLQEIRIENCPELVTISGPTQGSGSCSLIISDC-CALEKIMLQHDSSLGYISNISITNCTNLNSI 186
            +NL  +  +GC+ L +L      D   ++TSL +L +++C  ++  NL      N+QE+ I++CP + ++S PT G    SL + +C   LEK +L + S    + ++ I    NL SI
Sbjct:  964 VNLRKLDVYGCSKLVSLGEKQEEDGCNQLTSLRDLELRSCENLERCNL----PNNIQELSIDSCPLIASVSFPTGGHKLKSLQLDNCEQLLEKEVLLNTSMPPMLESVHIARWKNLKSI 1078
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101995.293.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2U1KKC3_ARTAN9.320e-631.09NB-ARC domains-containing protein n=1 Tax=Artemisi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 5..189
e-value: 5.1E-15
score: 56.6
IPR026906BspA type Leucine rich repeat regionPFAMPF13306LRR_5coord: 78..183
e-value: 5.0E-5
score: 23.3
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 20..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101995contigP-canaliculata_contig101995:295..861 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101995.293.1mRNA_P-canaliculata_contig101995.293.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig101995 295..861 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig101995.293.1 ID=prot_P-canaliculata_contig101995.293.1|Name=mRNA_P-canaliculata_contig101995.293.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=189bp
DLVLARIEAVQLTAEIKTLDDCRDHLNQLTHLKSILIFSNELENVDALQH
LEGLERVSFRGNSRSWSNIDALSDLNLSYVTFFGCNGLTNLDSLGKITSL
EELSIQNCNGIKELNLNDWNAKNLQEIRIENCPELVTISGPTQGSGSCSL
IISDCCALEKIMLQHDSSLGYISNISITNCTNLNSIGVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR026906LRR_5