mRNA_P-canaliculata_contig101995.293.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101995.293.1 vs. uniprot
Match: A0A2U1KKC3_ARTAN (NB-ARC domains-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KKC3_ARTAN) HSP 1 Score: 55.8 bits (133), Expect = 9.320e-6 Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 223 LNLSYVTFFGCNGLTNL------DSLGKITSLEELSIQNCNGIKELNLNDWNAKNLQEIRIENCPELVTISGPTQGSGSCSLIISDC-CALEKIMLQHDSSLGYISNISITNCTNLNSI 558
+NL + +GC+ L +L D ++TSL +L +++C ++ NL N+QE+ I++CP + ++S PT G SL + +C LEK +L + S + ++ I NL SI
Sbjct: 964 VNLRKLDVYGCSKLVSLGEKQEEDGCNQLTSLRDLELRSCENLERCNL----PNNIQELSIDSCPLIASVSFPTGGHKLKSLQLDNCEQLLEKEVLLNTSMPPMLESVHIARWKNLKSI 1078 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101995.293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101995.293.1 >prot_P-canaliculata_contig101995.293.1 ID=prot_P-canaliculata_contig101995.293.1|Name=mRNA_P-canaliculata_contig101995.293.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=189bp DLVLARIEAVQLTAEIKTLDDCRDHLNQLTHLKSILIFSNELENVDALQHback to top mRNA from alignment at P-canaliculata_contig101995:295..861+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101995.293.1 ID=mRNA_P-canaliculata_contig101995.293.1|Name=mRNA_P-canaliculata_contig101995.293.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at P-canaliculata_contig101995:295..861+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101995:295..861+ >mRNA_P-canaliculata_contig101995.293.1 ID=mRNA_P-canaliculata_contig101995.293.1|Name=mRNA_P-canaliculata_contig101995.293.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at P-canaliculata_contig101995:295..861+ (Pelvetia canaliculata dioecious)back to top |