mRNA_P-canaliculata_contig10196.288.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10196.288.1
Unique NamemRNA_P-canaliculata_contig10196.288.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.450e-22
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            G+ + +S PAAL  +L+ + +L+RLGMGWF GVITR++Q RTRHLYD+RV L+ D STRSMKLPL  Y  D  A  G W LL
Sbjct:  557 GFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILL 638          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.420e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            G+ + +S PAAL   L+ + +L+RLGMGWF G+ITR++Q RTRHLYD+RV L+ D STR MKL L  Y  D  A  G W LL
Sbjct:   27 GFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILL 108          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.300e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            G+ +  + P AL + L+ + +L+RLGMGWF G+IT++ Q  TRHLYD+ V LE D STR MKLPL KYS D  AA G W LL
Sbjct:   42 GFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 123          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5KHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.890e-20
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPW 237
            G+ +  + P AL + L+ + +L RLGMGWFRG+IT+++Q  TRHLYD+ + LE D STR MKLPL KYS D  AA G W
Sbjct:   82 GFRIQEAKPVALDRLLLRRGVLARLGMGWFRGLITQQSQKDTRHLYDYCMQLELDQSTRKMKLPLDKYSGDSDAAVGSW 160          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.930e-20
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            G+ L +S P+AL Q+LV + +L++LG+GWF GVI+R+A   +R  YD+RV L +DGSTRSMKLPL  YS D  A  G W LL
Sbjct: 1885 GFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLL 1966          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.480e-20
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            G+ + +  PAA+  +L+ + +L+RLGMGWF GVITRK+Q RTRHLYD+RV L+ D ST SMKLPL  Y     A  G W LL
Sbjct:  272 GFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5K5W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.950e-20
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPW 237
            G+ +  + P AL + L+ +E+L R+GMGWF G+IT ++Q  TRHLYD+ V LE D STR MK PL KYS D  AA G W
Sbjct:   24 GFRIQEAKPVALDRLLLRREVLFRVGMGWFGGLITEQSQKDTRHLYDYCVQLELDQSTRKMKSPLDKYSGDSDAAVGSW 102          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.240e-20
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    4 YSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            + +  + P AL + L+ + +L+RLGMGWF G+IT+++Q  TRHLYD+ V LE D STR+MKLPL KYS D  AA G W LL
Sbjct:  214 FRIQEAKPVALDRLLLRRGVLVRLGMGWFEGLITQQSQKDTRHLYDYSVQLELDQSTRTMKLPLDKYSGDSDAAGGSWVLL 294          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.150e-19
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            G+ + +S PAAL  +L+ + +L+RLGMGW  G+ITR++Q RTRHLYD+RV L+ D STRSMKLPL  Y  D  A    W LL
Sbjct:  126 GFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILL 206          
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JHV4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.260e-19
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246
            G+ +  + P AL + L+ + +L+RLGMGWF G+IT+++Q  TRHLYD+ V LE D STR MKLPL KYS D  AA G W LL
Sbjct:  599 GFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 680          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXN2_9PHAE4.450e-2258.54C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KHL7_9PHAE1.420e-2154.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE8.300e-2154.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK5_9PHAE1.890e-2054.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE1.930e-2054.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5J8_9PHAE5.480e-2054.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W3_9PHAE5.950e-2053.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC1_9PHAE8.240e-2054.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B3_9PHAE1.150e-1954.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHV4_9PHAE2.260e-1954.88HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10196contigP-canaliculata_contig10196:2..247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.8165565-CDS-P-canaliculata_contig10196:1..2471622815591.8165565-CDS-P-canaliculata_contig10196:1..247Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10196 2..247 +
1693494154.7307663-CDS-P-canaliculata_contig10196:1..2471693494154.7307663-CDS-P-canaliculata_contig10196:1..247Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10196 2..247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10196.288.1prot_P-canaliculata_contig10196.288.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10196 2..247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10196.288.1

>prot_P-canaliculata_contig10196.288.1 ID=prot_P-canaliculata_contig10196.288.1|Name=mRNA_P-canaliculata_contig10196.288.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=82bp
GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRV
FLETDGSTRSMKLPLAKYSVDGAAAEGPWALL
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mRNA from alignment at P-canaliculata_contig10196:2..247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10196.288.1 ID=mRNA_P-canaliculata_contig10196.288.1|Name=mRNA_P-canaliculata_contig10196.288.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at P-canaliculata_contig10196:2..247+ (Pelvetia canaliculata dioecious)
GGTTATTCTCTTGTAAGCTCAGCACCTGCCGCCCTCACTCAGAATCTTGT TAACCAAGAGATACTGCTTCGGCTGGGGATGGGTTGGTTCAGGGGGGTCA TCACACGAAAGGCCCAAGCACGCACACGCCATCTCTACGACTTCAGAGTG TTTCTCGAGACCGACGGCAGCACACGTAGCATGAAACTTCCGCTGGCGAA GTACTCGGTGGACGGGGCCGCGGCAGAGGGGCCGTGGGCGCTGCTA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10196:2..247+

>mRNA_P-canaliculata_contig10196.288.1 ID=mRNA_P-canaliculata_contig10196.288.1|Name=mRNA_P-canaliculata_contig10196.288.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at P-canaliculata_contig10196:2..247+ (Pelvetia canaliculata dioecious)
GGTTATTCTCTTGTAAGCTCAGCACCTGCCGCCCTCACTCAGAATCTTGT
TAACCAAGAGATACTGCTTCGGCTGGGGATGGGTTGGTTCAGGGGGGTCA
TCACACGAAAGGCCCAAGCACGCACACGCCATCTCTACGACTTCAGAGTG
TTTCTCGAGACCGACGGCAGCACACGTAGCATGAAACTTCCGCTGGCGAA
GTACTCGGTGGACGGGGCCGCGGCAGAGGGGCCGTGGGCGCTGCTAGGTT
ATTCTCTTGTAAGCTCAGCACCTGCCGCCCTCACTCAGAATCTTGTTAAC
CAAGAGATACTGCTTCGGCTGGGGATGGGTTGGTTCAGGGGGGTCATCAC
ACGAAAGGCCCAAGCACGCACACGCCATCTCTACGACTTCAGAGTGTTTC
TCGAGACCGACGGCAGCACACGTAGCATGAAACTTCCGCTGGCGAAGTAC
TCGGTGGACGGGGCCGCGGCAGAGGGGCCGTGGGCGCTGCTA
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