mRNA_P-canaliculata_contig10196.288.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 4.450e-22 Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 G+ + +S PAAL +L+ + +L+RLGMGWF GVITR++Q RTRHLYD+RV L+ D STRSMKLPL Y D A G W LL Sbjct: 557 GFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILL 638
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.420e-21 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 G+ + +S PAAL L+ + +L+RLGMGWF G+ITR++Q RTRHLYD+RV L+ D STR MKL L Y D A G W LL Sbjct: 27 GFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILL 108
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 8.300e-21 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 G+ + + P AL + L+ + +L+RLGMGWF G+IT++ Q TRHLYD+ V LE D STR MKLPL KYS D AA G W LL Sbjct: 42 GFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 123
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5KHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK5_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.890e-20 Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPW 237 G+ + + P AL + L+ + +L RLGMGWFRG+IT+++Q TRHLYD+ + LE D STR MKLPL KYS D AA G W Sbjct: 82 GFRIQEAKPVALDRLLLRRGVLARLGMGWFRGLITQQSQKDTRHLYDYCMQLELDQSTRKMKLPLDKYSGDSDAAVGSW 160
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.930e-20 Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 G+ L +S P+AL Q+LV + +L++LG+GWF GVI+R+A +R YD+RV L +DGSTRSMKLPL YS D A G W LL Sbjct: 1885 GFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLL 1966
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 5.480e-20 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 G+ + + PAA+ +L+ + +L+RLGMGWF GVITRK+Q RTRHLYD+RV L+ D ST SMKLPL Y A G W LL Sbjct: 272 GFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5K5W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W3_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 5.950e-20 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPW 237 G+ + + P AL + L+ +E+L R+GMGWF G+IT ++Q TRHLYD+ V LE D STR MK PL KYS D AA G W Sbjct: 24 GFRIQEAKPVALDRLLLRREVLFRVGMGWFGGLITEQSQKDTRHLYDYCVQLELDQSTRKMKSPLDKYSGDSDAAVGSW 102
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC1_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 8.240e-20 Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1 Query: 4 YSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 + + + P AL + L+ + +L+RLGMGWF G+IT+++Q TRHLYD+ V LE D STR+MKLPL KYS D AA G W LL Sbjct: 214 FRIQEAKPVALDRLLLRRGVLVRLGMGWFEGLITQQSQKDTRHLYDYSVQLELDQSTRTMKLPLDKYSGDSDAAGGSWVLL 294
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.150e-19 Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 G+ + +S PAAL +L+ + +L+RLGMGW G+ITR++Q RTRHLYD+RV L+ D STRSMKLPL Y D A W LL Sbjct: 126 GFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILL 206
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Match: A0A6H5JHV4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV4_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.260e-19 Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1 Query: 1 GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVFLETDGSTRSMKLPLAKYSVDGAAAEGPWALL 246 G+ + + P AL + L+ + +L+RLGMGWF G+IT+++Q TRHLYD+ V LE D STR MKLPL KYS D AA G W LL Sbjct: 599 GFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 680 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10196.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10196.288.1 >prot_P-canaliculata_contig10196.288.1 ID=prot_P-canaliculata_contig10196.288.1|Name=mRNA_P-canaliculata_contig10196.288.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=82bp GYSLVSSAPAALTQNLVNQEILLRLGMGWFRGVITRKAQARTRHLYDFRVback to top mRNA from alignment at P-canaliculata_contig10196:2..247+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10196.288.1 ID=mRNA_P-canaliculata_contig10196.288.1|Name=mRNA_P-canaliculata_contig10196.288.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at P-canaliculata_contig10196:2..247+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10196:2..247+ >mRNA_P-canaliculata_contig10196.288.1 ID=mRNA_P-canaliculata_contig10196.288.1|Name=mRNA_P-canaliculata_contig10196.288.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at P-canaliculata_contig10196:2..247+ (Pelvetia canaliculata dioecious)back to top |