mRNA_P-canaliculata_contig101867.271.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101867.271.1
Unique NamemRNA_P-canaliculata_contig101867.271.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101867.271.1 vs. uniprot
Match: UPI00167BE3AF (hypothetical protein n=1 Tax=Streptomyces aurantiogriseus TaxID=66870 RepID=UPI00167BE3AF)

HSP 1 Score: 58.2 bits (139), Expect = 3.910e-7
Identity = 44/112 (39.29%), Postives = 57/112 (50.89%), Query Frame = 1 
Query:  121 VEIADAVDIQKLQDEKLDLTGGTMTGDIILAGAPSSALGATPKSFVEE-------------------QDALKVSKAGDVMSGNLDMGGNELVGLPATPSATGATSVEYVDGL 399
            V++ D +D   L   KLDLTGGTM G II +G PS +  A  K++V+                    Q ALKVSKAGD M+G L + GN     P +P    A + +YVD L
Sbjct:   90 VDLGDQID--SLSTNKLDLTGGTMLGPIITSGVPSVSGEAVNKAYVDSEVSSGDAATFTSAQAYTDAQAALKVSKAGDAMTGPLTLPGN-----PTSP--LHAATKQYVDAL 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101867.271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00167BE3AF3.910e-739.29hypothetical protein n=1 Tax=Streptomyces aurantio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101867contigP-canaliculata_contig101867:110..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.7180398-CDS-P-canaliculata_contig101867:109..5381622815590.7180398-CDS-P-canaliculata_contig101867:109..538Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101867 110..538 -
1693494154.2040436-CDS-P-canaliculata_contig101867:109..5381693494154.2040436-CDS-P-canaliculata_contig101867:109..538Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101867 110..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101867.271.1prot_P-canaliculata_contig101867.271.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101867 110..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101867.271.1

>prot_P-canaliculata_contig101867.271.1 ID=prot_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=143bp
GFGLPVKTTAERTAYTPSRTGYQVYDTDLGKAFVWVNNAWVEIADAVDIQ
KLQDEKLDLTGGTMTGDIILAGAPSSALGATPKSFVEEQDALKVSKAGDV
MSGNLDMGGNELVGLPATPSATGATSVEYVDGLAANYATAAQG
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mRNA from alignment at P-canaliculata_contig101867:110..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101867.271.1 ID=mRNA_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at P-canaliculata_contig101867:110..538- (Pelvetia canaliculata dioecious)
GGGTTTGGCCTTCCGGTCAAAACCACAGCAGAGCGTACAGCATATACACC
TAGCCGAACTGGTTATCAGGTATATGATACCGATCTGGGGAAAGCATTTG
TATGGGTTAATAATGCATGGGTAGAGATTGCCGATGCTGTTGATATACAA
AAATTACAAGATGAAAAACTAGATTTAACCGGTGGTACGATGACTGGAGA
TATTATTCTCGCAGGCGCACCATCAAGTGCTCTTGGTGCAACACCTAAGA
GTTTCGTAGAAGAACAGGATGCACTAAAAGTATCAAAAGCTGGCGATGTA
ATGTCTGGCAATTTGGACATGGGTGGAAATGAGCTTGTTGGTCTTCCTGC
AACTCCTTCCGCAACTGGTGCAACATCTGTTGAGTATGTTGATGGATTGG
CAGCAAACTATGCTACAGCAGCTCAAGGT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101867:110..538-

>mRNA_P-canaliculata_contig101867.271.1 ID=mRNA_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at P-canaliculata_contig101867:110..538- (Pelvetia canaliculata dioecious)
GGGTTTGGCCTTCCGGTCAAAACCACAGCAGAGCGTACAGCATATACACC
TAGCCGAACTGGTTATCAGGTATATGATACCGATCTGGGGAAAGCATTTG
TATGGGTTAATAATGCATGGGTAGAGATTGCCGATGCTGTTGATATACAA
AAATTACAAGATGAAAAACTAGATTTAACCGGTGGTACGATGACTGGAGA
TATTATTCTCGCAGGCGCACCATCAAGTGCTCTTGGTGCAACACCTAAGA
GTTTCGTAGAAGAACAGGATGCACTAAAAGTATCAAAAGCTGGCGATGTA
ATGTCTGGCAATTTGGACATGGGTGGAAATGAGCTTGTTGGTCTTCCTGC
AACTCCTTCCGCAACTGGTGCAACATCTGTTGAGTATGTTGATGGATTGG
CAGCAAACTATGCTACAGCAGCTCAAGGTGGGTTTGGCCTTCCGGTCAAA
ACCACAGCAGAGCGTACAGCATATACACCTAGCCGAACTGGTTATCAGGT
ATATGATACCGATCTGGGGAAAGCATTTGTATGGGTTAATAATGCATGGG
TAGAGATTGCCGATGCTGTTGATATACAAAAATTACAAGATGAAAAACTA
GATTTAACCGGTGGTACGATGACTGGAGATATTATTCTCGCAGGCGCACC
ATCAAGTGCTCTTGGTGCAACACCTAAGAGTTTCGTAGAAGAACAGGATG
CACTAAAAGTATCAAAAGCTGGCGATGTAATGTCTGGCAATTTGGACATG
GGTGGAAATGAGCTTGTTGGTCTTCCTGCAACTCCTTCCGCAACTGGTGC
AACATCTGTTGAGTATGTTGATGGATTGGCAGCAAACTATGCTACAGCAG
CTCAAGGT
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