Homology
BLAST of mRNA_P-canaliculata_contig101867.271.1 vs. uniprot
Match:
UPI00167BE3AF (hypothetical protein n=1 Tax=Streptomyces aurantiogriseus TaxID=66870 RepID=UPI00167BE3AF)
HSP 1 Score: 58.2 bits (139), Expect = 3.910e-7
Identity = 44/112 (39.29%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 121 VEIADAVDIQKLQDEKLDLTGGTMTGDIILAGAPSSALGATPKSFVEE-------------------QDALKVSKAGDVMSGNLDMGGNELVGLPATPSATGATSVEYVDGL 399
V++ D +D L KLDLTGGTM G II +G PS + A K++V+ Q ALKVSKAGD M+G L + GN P +P A + +YVD L
Sbjct: 90 VDLGDQID--SLSTNKLDLTGGTMLGPIITSGVPSVSGEAVNKAYVDSEVSSGDAATFTSAQAYTDAQAALKVSKAGDAMTGPLTLPGN-----PTSP--LHAATKQYVDAL 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101867.271.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.91e-7 / Id = 39.29 Sequence UPI00167BE3AF
Match Name E-value Identity Description
UPI00167BE3AF 3.910e-7 39.29 hypothetical protein n=1 Tax=Streptomyces aurantio... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 429 Cds size 429 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815590.7180398-CDS-P-canaliculata_contig101867:109..538 1622815590.7180398-CDS-P-canaliculata_contig101867:109..538 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101867 110..538 - 1693494154.2040436-CDS-P-canaliculata_contig101867:109..538 1693494154.2040436-CDS-P-canaliculata_contig101867:109..538 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101867 110..538 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101867.271.1
>prot_P-canaliculata_contig101867.271.1 ID=prot_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=143bp
GFGLPVKTTAERTAYTPSRTGYQVYDTDLGKAFVWVNNAWVEIADAVDIQ back to top mRNA from alignment at P-canaliculata_contig101867:110..538-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101867.271.1 ID=mRNA_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at P-canaliculata_contig101867:110..538- (Pelvetia canaliculata dioecious)GGGTTTGGCCTTCCGGTCAAAACCACAGCAGAGCGTACAGCATATACACC
TAGCCGAACTGGTTATCAGGTATATGATACCGATCTGGGGAAAGCATTTG
TATGGGTTAATAATGCATGGGTAGAGATTGCCGATGCTGTTGATATACAA
AAATTACAAGATGAAAAACTAGATTTAACCGGTGGTACGATGACTGGAGA
TATTATTCTCGCAGGCGCACCATCAAGTGCTCTTGGTGCAACACCTAAGA
GTTTCGTAGAAGAACAGGATGCACTAAAAGTATCAAAAGCTGGCGATGTA
ATGTCTGGCAATTTGGACATGGGTGGAAATGAGCTTGTTGGTCTTCCTGC
AACTCCTTCCGCAACTGGTGCAACATCTGTTGAGTATGTTGATGGATTGG
CAGCAAACTATGCTACAGCAGCTCAAGGT back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101867:110..538-
>mRNA_P-canaliculata_contig101867.271.1 ID=mRNA_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at P-canaliculata_contig101867:110..538- (Pelvetia canaliculata dioecious) back to top