Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 670 |
| Cds size | 465 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815590.3299558-UTR-P-canaliculata_contig10179:6580..6618 | 1622815590.3299558-UTR-P-canaliculata_contig10179:6580..6618 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10179 6581..6618 + |
| 1693494153.961261-UTR-P-canaliculata_contig10179:6580..6618 | 1693494153.961261-UTR-P-canaliculata_contig10179:6580..6618 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10179 6581..6618 + |
| 1622815590.3516736-UTR-P-canaliculata_contig10179:7083..7250 | 1622815590.3516736-UTR-P-canaliculata_contig10179:7083..7250 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10179 7084..7250 + |
| 1693494153.992321-UTR-P-canaliculata_contig10179:7083..7250 | 1693494153.992321-UTR-P-canaliculata_contig10179:7083..7250 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10179 7084..7250 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815590.341413-CDS-P-canaliculata_contig10179:6618..7083 | 1622815590.341413-CDS-P-canaliculata_contig10179:6618..7083 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10179 6619..7083 + |
| 1693494153.9785788-CDS-P-canaliculata_contig10179:6618..7083 | 1693494153.9785788-CDS-P-canaliculata_contig10179:6618..7083 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10179 6619..7083 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10179.267.1 >prot_P-canaliculata_contig10179.267.1 ID=prot_P-canaliculata_contig10179.267.1|Name=mRNA_P-canaliculata_contig10179.267.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=155bp
MIYVVSRRCAGDGCARHPCYGMASRRKAEYCAEHALAGMINVSSKCCTVD
GCSTILSFGVAGSRKPKYCSNHAPEDMVNVVSRRCISDGCFKQSYHGIAG
SRKPEYCAEHAKEGMVNVVSKRCADGGCIKHPNYGVAGSGKREYCAEHAL
EGII* back to topmRNA from alignment at P-canaliculata_contig10179:6581..7250+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10179.267.1 ID=mRNA_P-canaliculata_contig10179.267.1|Name=mRNA_P-canaliculata_contig10179.267.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at P-canaliculata_contig10179:6581..7250+ (Pelvetia canaliculata dioecious)
GGAAGCCGGAACACTGTTCCAAACATGCTTTAGATGGGATGATATATGTC
GTTTCCAGAAGGTGTGCTGGCGATGGTTGCGCTAGGCACCCGTGCTACGG
AATGGCCAGCAGGAGGAAGGCGGAGTACTGCGCCGAGCATGCTTTGGCGG
GGATGATCAACGTTTCTTCTAAATGCTGTACCGTTGATGGATGCTCTACG
ATACTGAGCTTCGGGGTGGCCGGGAGCCGGAAGCCGAAGTACTGTTCGAA
TCACGCTCCGGAGGATATGGTAAACGTGGTTTCTAGACGCTGTATAAGTG
ATGGATGCTTCAAGCAATCTTACCATGGCATCGCCGGCAGCAGGAAACCG
GAATATTGTGCGGAGCATGCTAAGGAAGGGATGGTCAACGTCGTGTCGAA
GAGGTGTGCCGACGGTGGATGCATTAAGCACCCGAACTACGGCGTCGCCG
GTAGTGGAAAGCGGGAGTATTGCGCCGAGCATGCTTTGGAAGGAATTATT
TAGTAGTGCGACAGCAAAAGCTGAGACTAAGGAAGCGGCGGGCCAGTACC
ACTCCCCCGCGTGAATCCGTTCCGCGAGGAAAGAGAAGCGCTGACTCTAG
AGTTCCCACTGTAGCATCGAATCCGGGTACAGTTAAGGTCGAGGTGCGAT
ATCAATGTAGTTAGTTTACG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10179:6581..7250+ >mRNA_P-canaliculata_contig10179.267.1 ID=mRNA_P-canaliculata_contig10179.267.1|Name=mRNA_P-canaliculata_contig10179.267.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at P-canaliculata_contig10179:6581..7250+ (Pelvetia canaliculata dioecious)
ATGATATATGTCGTTTCCAGAAGGTGTGCTGGCGATGGTTGCGCTAGGCA
CCCGTGCTACGGAATGGCCAGCAGGAGGAAGGCGGAGTACTGCGCCGAGC
ATGCTTTGGCGGGGATGATCAACGTTTCTTCTAAATGCTGTACCGTTGAT
GGATGCTCTACGATACTGAGCTTCGGGGTGGCCGGGAGCCGGAAGCCGAA
GTACTGTTCGAATCACGCTCCGGAGGATATGGTAAACGTGGTTTCTAGAC
GCTGTATAAGTGATGGATGCTTCAAGCAATCTTACCATGGCATCGCCGGC
AGCAGGAAACCGGAATATTGTGCGGAGCATGCTAAGGAAGGGATGGTCAA
CGTCGTGTCGAAGAGGTGTGCCGACGGTGGATGCATTAAGCACCCGAACT
ACGGCGTCGCCGGTAGTGGAAAGCGGGAGTATTGCGCCGAGCATGCTTTG
GAAGGAATTATTTAGATGATATATGTCGTTTCCAGAAGGTGTGCTGGCGA
TGGTTGCGCTAGGCACCCGTGCTACGGAATGGCCAGCAGGAGGAAGGCGG
AGTACTGCGCCGAGCATGCTTTGGCGGGGATGATCAACGTTTCTTCTAAA
TGCTGTACCGTTGATGGATGCTCTACGATACTGAGCTTCGGGGTGGCCGG
GAGCCGGAAGCCGAAGTACTGTTCGAATCACGCTCCGGAGGATATGGTAA
ACGTGGTTTCTAGACGCTGTATAAGTGATGGATGCTTCAAGCAATCTTAC
CATGGCATCGCCGGCAGCAGGAAACCGGAATATTGTGCGGAGCATGCTAA
GGAAGGGATGGTCAACGTCGTGTCGAAGAGGTGTGCCGACGGTGGATGCA
TTAAGCACCCGAACTACGGCGTCGCCGGTAGTGGAAAGCGGGAGTATTGC
GCCGAGCATGCTTTGGAAGGAATTATTTAG back to top
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