mRNA_P-canaliculata_contig10179.267.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10179.267.1
Unique NamemRNA_P-canaliculata_contig10179.267.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10179.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10179contigP-canaliculata_contig10179:6581..7250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size670
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10179.267.1prot_P-canaliculata_contig10179.267.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10179 6619..7083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.3299558-UTR-P-canaliculata_contig10179:6580..66181622815590.3299558-UTR-P-canaliculata_contig10179:6580..6618Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 6581..6618 +
1693494153.961261-UTR-P-canaliculata_contig10179:6580..66181693494153.961261-UTR-P-canaliculata_contig10179:6580..6618Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 6581..6618 +
1622815590.3516736-UTR-P-canaliculata_contig10179:7083..72501622815590.3516736-UTR-P-canaliculata_contig10179:7083..7250Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 7084..7250 +
1693494153.992321-UTR-P-canaliculata_contig10179:7083..72501693494153.992321-UTR-P-canaliculata_contig10179:7083..7250Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10179 7084..7250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.341413-CDS-P-canaliculata_contig10179:6618..70831622815590.341413-CDS-P-canaliculata_contig10179:6618..7083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10179 6619..7083 +
1693494153.9785788-CDS-P-canaliculata_contig10179:6618..70831693494153.9785788-CDS-P-canaliculata_contig10179:6618..7083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10179 6619..7083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10179.267.1

>prot_P-canaliculata_contig10179.267.1 ID=prot_P-canaliculata_contig10179.267.1|Name=mRNA_P-canaliculata_contig10179.267.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=155bp
MIYVVSRRCAGDGCARHPCYGMASRRKAEYCAEHALAGMINVSSKCCTVD
GCSTILSFGVAGSRKPKYCSNHAPEDMVNVVSRRCISDGCFKQSYHGIAG
SRKPEYCAEHAKEGMVNVVSKRCADGGCIKHPNYGVAGSGKREYCAEHAL
EGII*
back to top

mRNA from alignment at P-canaliculata_contig10179:6581..7250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10179.267.1 ID=mRNA_P-canaliculata_contig10179.267.1|Name=mRNA_P-canaliculata_contig10179.267.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at P-canaliculata_contig10179:6581..7250+ (Pelvetia canaliculata dioecious)
GGAAGCCGGAACACTGTTCCAAACATGCTTTAGATGGGATGATATATGTC
GTTTCCAGAAGGTGTGCTGGCGATGGTTGCGCTAGGCACCCGTGCTACGG
AATGGCCAGCAGGAGGAAGGCGGAGTACTGCGCCGAGCATGCTTTGGCGG
GGATGATCAACGTTTCTTCTAAATGCTGTACCGTTGATGGATGCTCTACG
ATACTGAGCTTCGGGGTGGCCGGGAGCCGGAAGCCGAAGTACTGTTCGAA
TCACGCTCCGGAGGATATGGTAAACGTGGTTTCTAGACGCTGTATAAGTG
ATGGATGCTTCAAGCAATCTTACCATGGCATCGCCGGCAGCAGGAAACCG
GAATATTGTGCGGAGCATGCTAAGGAAGGGATGGTCAACGTCGTGTCGAA
GAGGTGTGCCGACGGTGGATGCATTAAGCACCCGAACTACGGCGTCGCCG
GTAGTGGAAAGCGGGAGTATTGCGCCGAGCATGCTTTGGAAGGAATTATT
TAGTAGTGCGACAGCAAAAGCTGAGACTAAGGAAGCGGCGGGCCAGTACC
ACTCCCCCGCGTGAATCCGTTCCGCGAGGAAAGAGAAGCGCTGACTCTAG
AGTTCCCACTGTAGCATCGAATCCGGGTACAGTTAAGGTCGAGGTGCGAT
ATCAATGTAGTTAGTTTACG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10179:6581..7250+

>mRNA_P-canaliculata_contig10179.267.1 ID=mRNA_P-canaliculata_contig10179.267.1|Name=mRNA_P-canaliculata_contig10179.267.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at P-canaliculata_contig10179:6581..7250+ (Pelvetia canaliculata dioecious)
ATGATATATGTCGTTTCCAGAAGGTGTGCTGGCGATGGTTGCGCTAGGCA
CCCGTGCTACGGAATGGCCAGCAGGAGGAAGGCGGAGTACTGCGCCGAGC
ATGCTTTGGCGGGGATGATCAACGTTTCTTCTAAATGCTGTACCGTTGAT
GGATGCTCTACGATACTGAGCTTCGGGGTGGCCGGGAGCCGGAAGCCGAA
GTACTGTTCGAATCACGCTCCGGAGGATATGGTAAACGTGGTTTCTAGAC
GCTGTATAAGTGATGGATGCTTCAAGCAATCTTACCATGGCATCGCCGGC
AGCAGGAAACCGGAATATTGTGCGGAGCATGCTAAGGAAGGGATGGTCAA
CGTCGTGTCGAAGAGGTGTGCCGACGGTGGATGCATTAAGCACCCGAACT
ACGGCGTCGCCGGTAGTGGAAAGCGGGAGTATTGCGCCGAGCATGCTTTG
GAAGGAATTATTTAGATGATATATGTCGTTTCCAGAAGGTGTGCTGGCGA
TGGTTGCGCTAGGCACCCGTGCTACGGAATGGCCAGCAGGAGGAAGGCGG
AGTACTGCGCCGAGCATGCTTTGGCGGGGATGATCAACGTTTCTTCTAAA
TGCTGTACCGTTGATGGATGCTCTACGATACTGAGCTTCGGGGTGGCCGG
GAGCCGGAAGCCGAAGTACTGTTCGAATCACGCTCCGGAGGATATGGTAA
ACGTGGTTTCTAGACGCTGTATAAGTGATGGATGCTTCAAGCAATCTTAC
CATGGCATCGCCGGCAGCAGGAAACCGGAATATTGTGCGGAGCATGCTAA
GGAAGGGATGGTCAACGTCGTGTCGAAGAGGTGTGCCGACGGTGGATGCA
TTAAGCACCCGAACTACGGCGTCGCCGGTAGTGGAAAGCGGGAGTATTGC
GCCGAGCATGCTTTGGAAGGAATTATTTAG
back to top