mRNA_P-canaliculata_contig101695.263.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A7Y3GBN7_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GBN7_9DELT) HSP 1 Score: 160 bits (406), Expect = 4.120e-46 Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 Query: 10 TLQLSNTDFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDYELNGSLPQPTPSGFPGFALVRSFSSGDDFYSQSPEATLQFQVDSAADLSDGLQLSDLSGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLLVNVDLGEEYIAGLSFTPTTA--VPEPSAVALLGLGFTLAAMRRR 612
TL S++DFG+ F+NV F F+IE++ P+ A G + NP + ++Y++NGSL TPSGFP F LVR G +FY+Q ++LQF++ + ADLSDGLQ+S+L +G + FD E GRYHP L ADGTGL++NS+N NP NG +V+V++G+EY+ LSF +T VPEP ++L+ + +LAA+RRR
Sbjct: 31 TLAFSSSDFGLNPTFSNVVDFTFEIEVAGPL-APGVYANPTLIGVEYQVNGSLAMGTPSGFPAFFLVRDIG-GAEFYAQG--SSLQFEISALADLSDGLQVSEL--VGGTGVFVFDGHETGT--GRYHPALFELNADGTGLIRNSDNTGGI-NPGNGQMVDVEIGDEYVTELSFDASTLTLVPEPGLLSLVAI--SLAAIRRR 222
BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A7Y1Y5M6_9BACT (Uncharacterized protein n=1 Tax=Akkermansiaceae bacterium TaxID=2562705 RepID=A0A7Y1Y5M6_9BACT) HSP 1 Score: 144 bits (363), Expect = 1.690e-39 Identity = 98/222 (44.14%), Postives = 130/222 (58.56%), Query Frame = 1 Query: 10 TLQLSNTDFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDYELNGSLPQPTPSGFPGFA--LVRSFSS-----GDDFY----SQSPEATLQFQVDSAADLSDGLQLSDL----SGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLL--VNVDLGEEYIAGLSFTP---TTAVPEPSAVALLGLGFTLAAMRRRR 615
TL SN+DF + F+NVT++ FDIE++ + G F +P I+ I Y + G+L PTPSGFP FA L F + GD FY S P TL+F+V A+ DGLQL +L + G I +ARE + GRYHP LR+DGTG++QN+NNM NP +G + ++VD G+EYI L+FTP T VPEP ALL +G + A RRRR
Sbjct: 14 TLSFSNSDFMNSPRFSNVTTYAFDIEIAGGL-RSGVFSDPVITNIQYSVRGTL-DPTPSGFPAFAFQLDHRFPNSPPITGDQFYALNASAIPGETLRFEVRDDANFEDGLQLDELVELPASFGTGVIFHLNARE--EGTGRYHPAFFQLRSDGTGIIQNANNMGG-DNPQDGFMGDIDVDFGDEYITDLAFTPAGVTIGVPEPGLPALLVMGGLVLAARRRR 230
BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A2E6GP93_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GP93_9PROT) HSP 1 Score: 143 bits (361), Expect = 3.200e-39 Identity = 83/187 (44.39%), Postives = 118/187 (63.10%), Query Frame = 1 Query: 31 DFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDYELNGSLPQPTPSGFPGFALVRSFSSGDDFYSQSPEATLQFQVDSAADLSDGLQLSDLSGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLLVNVDLGEEYIAGLSF-TPTTAVPEPSAVALLGLGF 588
DFG+T F+N +F F I++ P+ AG T+ NP ++ +DY + G L TPSGFP F L RS + G DFY+Q +++ F++ + ADL+DGLQ+S+L G G + F+ARE+ GRYHPP + L DGTG++QNSNN NP+ +V+VD GEEYI L+F T T + + V+ GF
Sbjct: 34 DFGLTPIFSNSQTFNFTIDIDAPLTAGTTYTNPTLNSVDYRVFGFL-AATPSGFPAFDLSRSIT-GTDFYAQG--SSMSFEISAFADLTDGLQVSELVGTGV--VFEFNAREVGN--GRYHPPIVQLNTDGTGIIQNSNNFGGI-NPATLQVVDVDFGEEYITALTFNTSTLTIADAPPVSSPAFGF 211
BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A524KEP5_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A524KEP5_9GAMM) HSP 1 Score: 114 bits (284), Expect = 2.090e-28 Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 1 Query: 124 NPAISRIDYELNGSLPQPTPSGFPGFALVRSFSSGDDFYSQSPEATLQFQVDSAADLSDGLQLSDLSGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLLVNVDLGEEYIAGLSFTP--TTAVPEPSAVALLG 579
NP I+ ++Y+++G L TPSGFP FAL R + G +FY+Q ++LQF++ S A LSDGLQ+++L+G G + F+ RE+ D GRYHP L L +GTG++QNSNN+ T P V VD GEEYI L+F P T V P + G
Sbjct: 4 NPIITSVNYQVSGVLEPGTPSGFPSFALSRIIT-GAEFYAQG--SSLQFEIASNAVLSDGLQVAELAGNGI--VFTFNGREI--DNGRYHPALLELNGNGTGMIQNSNNIPTQGPPP----VEVDFGEEYITNLAFDPGNLTIVEAPVTIGSSG 146 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101695.263.1 >prot_P-canaliculata_contig101695.263.1 ID=prot_P-canaliculata_contig101695.263.1|Name=mRNA_P-canaliculata_contig101695.263.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=207bp QTTTLQLSNTDFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDYback to top mRNA from alignment at P-canaliculata_contig101695:155..775- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101695.263.1 ID=mRNA_P-canaliculata_contig101695.263.1|Name=mRNA_P-canaliculata_contig101695.263.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at P-canaliculata_contig101695:155..775- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101695:155..775- >mRNA_P-canaliculata_contig101695.263.1 ID=mRNA_P-canaliculata_contig101695.263.1|Name=mRNA_P-canaliculata_contig101695.263.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at P-canaliculata_contig101695:155..775- (Pelvetia canaliculata dioecious)back to top |