mRNA_P-canaliculata_contig101695.263.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101695.263.1
Unique NamemRNA_P-canaliculata_contig101695.263.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A7Y3GBN7_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GBN7_9DELT)

HSP 1 Score: 160 bits (406), Expect = 4.120e-46
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:   10 TLQLSNTDFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDYELNGSLPQPTPSGFPGFALVRSFSSGDDFYSQSPEATLQFQVDSAADLSDGLQLSDLSGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLLVNVDLGEEYIAGLSFTPTTA--VPEPSAVALLGLGFTLAAMRRR 612
            TL  S++DFG+   F+NV  F F+IE++ P+ A G + NP +  ++Y++NGSL   TPSGFP F LVR    G +FY+Q   ++LQF++ + ADLSDGLQ+S+L  +G   +  FD  E     GRYHP    L ADGTGL++NS+N     NP NG +V+V++G+EY+  LSF  +T   VPEP  ++L+ +  +LAA+RRR
Sbjct:   31 TLAFSSSDFGLNPTFSNVVDFTFEIEVAGPL-APGVYANPTLIGVEYQVNGSLAMGTPSGFPAFFLVRDIG-GAEFYAQG--SSLQFEISALADLSDGLQVSEL--VGGTGVFVFDGHETGT--GRYHPALFELNADGTGLIRNSDNTGGI-NPGNGQMVDVEIGDEYVTELSFDASTLTLVPEPGLLSLVAI--SLAAIRRR 222
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BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A7Y1Y5M6_9BACT (Uncharacterized protein n=1 Tax=Akkermansiaceae bacterium TaxID=2562705 RepID=A0A7Y1Y5M6_9BACT)

HSP 1 Score: 144 bits (363), Expect = 1.690e-39
Identity = 98/222 (44.14%), Postives = 130/222 (58.56%), Query Frame = 1 
Query:   10 TLQLSNTDFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDYELNGSLPQPTPSGFPGFA--LVRSFSS-----GDDFY----SQSPEATLQFQVDSAADLSDGLQLSDL----SGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLL--VNVDLGEEYIAGLSFTP---TTAVPEPSAVALLGLGFTLAAMRRRR 615
            TL  SN+DF  +  F+NVT++ FDIE++  +   G F +P I+ I Y + G+L  PTPSGFP FA  L   F +     GD FY    S  P  TL+F+V   A+  DGLQL +L    +  G   I   +ARE  +  GRYHP    LR+DGTG++QN+NNM    NP +G +  ++VD G+EYI  L+FTP   T  VPEP   ALL +G  + A RRRR
Sbjct:   14 TLSFSNSDFMNSPRFSNVTTYAFDIEIAGGL-RSGVFSDPVITNIQYSVRGTL-DPTPSGFPAFAFQLDHRFPNSPPITGDQFYALNASAIPGETLRFEVRDDANFEDGLQLDELVELPASFGTGVIFHLNARE--EGTGRYHPAFFQLRSDGTGIIQNANNMGG-DNPQDGFMGDIDVDFGDEYITDLAFTPAGVTIGVPEPGLPALLVMGGLVLAARRRR 230
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BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A2E6GP93_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GP93_9PROT)

HSP 1 Score: 143 bits (361), Expect = 3.200e-39
Identity = 83/187 (44.39%), Postives = 118/187 (63.10%), Query Frame = 1 
Query:   31 DFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDYELNGSLPQPTPSGFPGFALVRSFSSGDDFYSQSPEATLQFQVDSAADLSDGLQLSDLSGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLLVNVDLGEEYIAGLSF-TPTTAVPEPSAVALLGLGF 588
            DFG+T  F+N  +F F I++  P+ AG T+ NP ++ +DY + G L   TPSGFP F L RS + G DFY+Q   +++ F++ + ADL+DGLQ+S+L G G   +  F+ARE+    GRYHPP + L  DGTG++QNSNN     NP+   +V+VD GEEYI  L+F T T  + +   V+    GF
Sbjct:   34 DFGLTPIFSNSQTFNFTIDIDAPLTAGTTYTNPTLNSVDYRVFGFL-AATPSGFPAFDLSRSIT-GTDFYAQG--SSMSFEISAFADLTDGLQVSELVGTGV--VFEFNAREVGN--GRYHPPIVQLNTDGTGIIQNSNNFGGI-NPATLQVVDVDFGEEYITALTFNTSTLTIADAPPVSSPAFGF 211
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BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Match: A0A524KEP5_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A524KEP5_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 2.090e-28
Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 1 
Query:  124 NPAISRIDYELNGSLPQPTPSGFPGFALVRSFSSGDDFYSQSPEATLQFQVDSAADLSDGLQLSDLSGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNNMSTFPNPSNGLLVNVDLGEEYIAGLSFTP--TTAVPEPSAVALLG 579
            NP I+ ++Y+++G L   TPSGFP FAL R  + G +FY+Q   ++LQF++ S A LSDGLQ+++L+G G   +  F+ RE+  D GRYHP  L L  +GTG++QNSNN+ T   P     V VD GEEYI  L+F P   T V  P  +   G
Sbjct:    4 NPIITSVNYQVSGVLEPGTPSGFPSFALSRIIT-GAEFYAQG--SSLQFEIASNAVLSDGLQVAELAGNGI--VFTFNGREI--DNGRYHPALLELNGNGTGMIQNSNNIPTQGPPP----VEVDFGEEYITNLAFDPGNLTIVEAPVTIGSSG 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101695.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Y3GBN7_9DELT4.120e-4645.81Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7Y1Y5M6_9BACT1.690e-3944.14Uncharacterized protein n=1 Tax=Akkermansiaceae ba... [more]
A0A2E6GP93_9PROT3.200e-3944.39Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A524KEP5_9GAMM2.090e-2845.45Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101695contigP-canaliculata_contig101695:155..775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size621
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.1385202-CDS-P-canaliculata_contig101695:154..7751622815590.1385202-CDS-P-canaliculata_contig101695:154..775Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101695 155..775 -
1693494153.8825054-CDS-P-canaliculata_contig101695:154..7751693494153.8825054-CDS-P-canaliculata_contig101695:154..775Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101695 155..775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101695.263.1prot_P-canaliculata_contig101695.263.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101695 155..775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101695.263.1

>prot_P-canaliculata_contig101695.263.1 ID=prot_P-canaliculata_contig101695.263.1|Name=mRNA_P-canaliculata_contig101695.263.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=207bp
QTTTLQLSNTDFGITNDFNNVTSFQFDIELSEPIFAGGTFVNPAISRIDY
ELNGSLPQPTPSGFPGFALVRSFSSGDDFYSQSPEATLQFQVDSAADLSD
GLQLSDLSGLGAETILFFDARELNQDPGRYHPPQLTLRADGTGLLQNSNN
MSTFPNPSNGLLVNVDLGEEYIAGLSFTPTTAVPEPSAVALLGLGFTLAA
MRRRRR*
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mRNA from alignment at P-canaliculata_contig101695:155..775-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101695.263.1 ID=mRNA_P-canaliculata_contig101695.263.1|Name=mRNA_P-canaliculata_contig101695.263.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at P-canaliculata_contig101695:155..775- (Pelvetia canaliculata dioecious)
CAAACAACGACGTTGCAGCTCAGTAATACCGATTTTGGAATTACCAACGA
CTTTAACAACGTCACCTCGTTCCAGTTCGACATCGAGTTGTCCGAGCCAA
TCTTCGCCGGTGGGACGTTCGTCAACCCAGCGATTTCGCGAATTGACTAC
GAGCTGAATGGATCGCTTCCTCAACCGACACCATCAGGGTTTCCTGGCTT
TGCCTTGGTGCGAAGTTTCTCCTCGGGCGACGATTTTTATTCACAGTCGC
CTGAAGCAACGCTTCAGTTTCAAGTCGATTCGGCTGCCGACTTAAGCGAT
GGTTTGCAATTGTCGGACCTCAGCGGACTCGGCGCCGAAACAATTCTGTT
TTTTGACGCACGCGAATTAAATCAAGACCCGGGTCGCTACCATCCTCCGC
AATTGACGTTGCGTGCCGACGGAACTGGCCTGCTGCAAAACTCGAACAAC
ATGAGTACTTTCCCCAATCCCAGCAATGGTTTGTTAGTTAATGTCGATTT
GGGTGAGGAGTACATCGCAGGCCTCAGTTTCACTCCCACAACTGCCGTGC
CAGAGCCATCTGCGGTTGCCTTGCTAGGCCTTGGATTTACACTGGCAGCT
ATGCGTCGACGCCGACGTTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101695:155..775-

>mRNA_P-canaliculata_contig101695.263.1 ID=mRNA_P-canaliculata_contig101695.263.1|Name=mRNA_P-canaliculata_contig101695.263.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at P-canaliculata_contig101695:155..775- (Pelvetia canaliculata dioecious)
CAAACAACGACGTTGCAGCTCAGTAATACCGATTTTGGAATTACCAACGA
CTTTAACAACGTCACCTCGTTCCAGTTCGACATCGAGTTGTCCGAGCCAA
TCTTCGCCGGTGGGACGTTCGTCAACCCAGCGATTTCGCGAATTGACTAC
GAGCTGAATGGATCGCTTCCTCAACCGACACCATCAGGGTTTCCTGGCTT
TGCCTTGGTGCGAAGTTTCTCCTCGGGCGACGATTTTTATTCACAGTCGC
CTGAAGCAACGCTTCAGTTTCAAGTCGATTCGGCTGCCGACTTAAGCGAT
GGTTTGCAATTGTCGGACCTCAGCGGACTCGGCGCCGAAACAATTCTGTT
TTTTGACGCACGCGAATTAAATCAAGACCCGGGTCGCTACCATCCTCCGC
AATTGACGTTGCGTGCCGACGGAACTGGCCTGCTGCAAAACTCGAACAAC
ATGAGTACTTTCCCCAATCCCAGCAATGGTTTGTTAGTTAATGTCGATTT
GGGTGAGGAGTACATCGCAGGCCTCAGTTTCACTCCCACAACTGCCGTGC
CAGAGCCATCTGCGGTTGCCTTGCTAGGCCTTGGATTTACACTGGCAGCT
ATGCGTCGACGCCGACGTTAACAAACAACGACGTTGCAGCTCAGTAATAC
CGATTTTGGAATTACCAACGACTTTAACAACGTCACCTCGTTCCAGTTCG
ACATCGAGTTGTCCGAGCCAATCTTCGCCGGTGGGACGTTCGTCAACCCA
GCGATTTCGCGAATTGACTACGAGCTGAATGGATCGCTTCCTCAACCGAC
ACCATCAGGGTTTCCTGGCTTTGCCTTGGTGCGAAGTTTCTCCTCGGGCG
ACGATTTTTATTCACAGTCGCCTGAAGCAACGCTTCAGTTTCAAGTCGAT
TCGGCTGCCGACTTAAGCGATGGTTTGCAATTGTCGGACCTCAGCGGACT
CGGCGCCGAAACAATTCTGTTTTTTGACGCACGCGAATTAAATCAAGACC
CGGGTCGCTACCATCCTCCGCAATTGACGTTGCGTGCCGACGGAACTGGC
CTGCTGCAAAACTCGAACAACATGAGTACTTTCCCCAATCCCAGCAATGG
TTTGTTAGTTAATGTCGATTTGGGTGAGGAGTACATCGCAGGCCTCAGTT
TCACTCCCACAACTGCCGTGCCAGAGCCATCTGCGGTTGCCTTGCTAGGC
CTTGGATTTACACTGGCAGCTATGCGTCGACGCCGACGTTAA
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