mRNA_P-canaliculata_contig101692.261.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101692.261.1
Unique NamemRNA_P-canaliculata_contig101692.261.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101692.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101692contigP-canaliculata_contig101692:8..1006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue1e-06
Seed eggNOG ortholog688270.Celal_3882
EggNOG free text desc.Leucine Rich repeats (2 copies)
EggNOG OGs1FAIA@104264,1IGQD@117743,4PHZB@976,COG4886@1,COG4886@2
COG Functional cat.S
Best tax levelCellulophaga
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size999
Cds size999
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.0473409-CDS-P-canaliculata_contig101692:7..10061622815590.0473409-CDS-P-canaliculata_contig101692:7..1006Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101692 8..1006 -
1693494153.8590472-CDS-P-canaliculata_contig101692:7..10061693494153.8590472-CDS-P-canaliculata_contig101692:7..1006Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101692 8..1006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101692.261.1prot_P-canaliculata_contig101692.261.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101692 8..1006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101692.261.1

>prot_P-canaliculata_contig101692.261.1 ID=prot_P-canaliculata_contig101692.261.1|Name=mRNA_P-canaliculata_contig101692.261.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=333bp
IGYLKNLKELYLQQNELEKLPKSFSYLTKLQKINLSLNKFQVFPKTIFNF
KLLEYINVSGNKIKVLPKQIGLLKRLTYLNISENRISTIPTRLYVLRKLK
KANFHFNNNLLSDVIIKEIDEKLGKIKSSPKKKKVKEAPSKTLRKASENL
LEDETKSIKGISGLFIFRDLGLIILIPFLLYLFFKYNENMDLKIEEDKIK
KDKEAYALAVQNMKASKERILEKTKEIYVYTNDTASLKLTIAANAYFSDL
EFNKRYTYMFKRKTKYINKFLNNKSYGYKGVIDKCRKKFSQLWLHDSVIP
NGYAKKFRIVRYYRMNAKERAYNIERDKKRAYY
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mRNA from alignment at P-canaliculata_contig101692:8..1006-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101692.261.1 ID=mRNA_P-canaliculata_contig101692.261.1|Name=mRNA_P-canaliculata_contig101692.261.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at P-canaliculata_contig101692:8..1006- (Pelvetia canaliculata dioecious)
ATTGGGTATCTTAAAAATTTAAAAGAACTTTATTTACAACAAAACGAACT
AGAAAAACTACCCAAAAGTTTCTCATATCTAACTAAATTACAAAAGATAA
ACCTTAGTTTAAATAAGTTTCAAGTCTTTCCGAAAACAATTTTCAATTTT
AAACTTCTTGAATATATTAATGTTAGCGGAAATAAAATAAAAGTACTTCC
TAAGCAAATTGGTCTTTTAAAGAGGTTAACATATTTAAATATTTCAGAGA
ATAGAATAAGTACAATTCCGACAAGATTATATGTTTTACGAAAATTAAAA
AAAGCCAATTTTCATTTTAATAATAATTTACTTTCTGATGTTATTATAAA
GGAAATAGATGAAAAATTAGGGAAAATAAAATCGAGTCCTAAAAAAAAGA
AGGTAAAAGAAGCGCCATCAAAAACACTAAGAAAAGCATCTGAAAACTTA
TTAGAGGATGAAACTAAAAGTATTAAAGGTATTTCTGGTTTATTTATTTT
TAGAGATTTAGGTTTAATTATACTCATTCCTTTTTTATTGTACTTGTTCT
TTAAGTATAACGAGAATATGGATTTGAAGATAGAAGAAGATAAAATCAAA
AAAGATAAAGAAGCGTATGCTTTGGCTGTTCAAAATATGAAGGCATCCAA
AGAAAGAATATTAGAAAAAACAAAAGAAATTTACGTATATACAAATGATA
CTGCTAGTTTAAAATTAACGATTGCTGCAAATGCATATTTTTCTGATTTA
GAATTTAATAAGAGGTATACGTATATGTTTAAAAGAAAGACAAAGTATAT
CAATAAATTTTTAAACAATAAAAGTTACGGTTACAAAGGAGTTATAGATA
AATGTAGAAAAAAATTCTCTCAATTGTGGTTACACGATTCTGTTATTCCT
AATGGATATGCTAAAAAATTTAGAATTGTAAGATATTATAGAATGAATGC
TAAAGAAAGAGCGTATAATATTGAGCGAGATAAAAAAAGAGCTTACTAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101692:8..1006-

>mRNA_P-canaliculata_contig101692.261.1 ID=mRNA_P-canaliculata_contig101692.261.1|Name=mRNA_P-canaliculata_contig101692.261.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at P-canaliculata_contig101692:8..1006- (Pelvetia canaliculata dioecious)
ATTGGGTATCTTAAAAATTTAAAAGAACTTTATTTACAACAAAACGAACT
AGAAAAACTACCCAAAAGTTTCTCATATCTAACTAAATTACAAAAGATAA
ACCTTAGTTTAAATAAGTTTCAAGTCTTTCCGAAAACAATTTTCAATTTT
AAACTTCTTGAATATATTAATGTTAGCGGAAATAAAATAAAAGTACTTCC
TAAGCAAATTGGTCTTTTAAAGAGGTTAACATATTTAAATATTTCAGAGA
ATAGAATAAGTACAATTCCGACAAGATTATATGTTTTACGAAAATTAAAA
AAAGCCAATTTTCATTTTAATAATAATTTACTTTCTGATGTTATTATAAA
GGAAATAGATGAAAAATTAGGGAAAATAAAATCGAGTCCTAAAAAAAAGA
AGGTAAAAGAAGCGCCATCAAAAACACTAAGAAAAGCATCTGAAAACTTA
TTAGAGGATGAAACTAAAAGTATTAAAGGTATTTCTGGTTTATTTATTTT
TAGAGATTTAGGTTTAATTATACTCATTCCTTTTTTATTGTACTTGTTCT
TTAAGTATAACGAGAATATGGATTTGAAGATAGAAGAAGATAAAATCAAA
AAAGATAAAGAAGCGTATGCTTTGGCTGTTCAAAATATGAAGGCATCCAA
AGAAAGAATATTAGAAAAAACAAAAGAAATTTACGTATATACAAATGATA
CTGCTAGTTTAAAATTAACGATTGCTGCAAATGCATATTTTTCTGATTTA
GAATTTAATAAGAGGTATACGTATATGTTTAAAAGAAAGACAAAGTATAT
CAATAAATTTTTAAACAATAAAAGTTACGGTTACAAAGGAGTTATAGATA
AATGTAGAAAAAAATTCTCTCAATTGTGGTTACACGATTCTGTTATTCCT
AATGGATATGCTAAAAAATTTAGAATTGTAAGATATTATAGAATGAATGC
TAAAGAAAGAGCGTATAATATTGAGCGAGATAAAAAAAGAGCTTACTATA
TTGGGTATCTTAAAAATTTAAAAGAACTTTATTTACAACAAAACGAACTA
GAAAAACTACCCAAAAGTTTCTCATATCTAACTAAATTACAAAAGATAAA
CCTTAGTTTAAATAAGTTTCAAGTCTTTCCGAAAACAATTTTCAATTTTA
AACTTCTTGAATATATTAATGTTAGCGGAAATAAAATAAAAGTACTTCCT
AAGCAAATTGGTCTTTTAAAGAGGTTAACATATTTAAATATTTCAGAGAA
TAGAATAAGTACAATTCCGACAAGATTATATGTTTTACGAAAATTAAAAA
AAGCCAATTTTCATTTTAATAATAATTTACTTTCTGATGTTATTATAAAG
GAAATAGATGAAAAATTAGGGAAAATAAAATCGAGTCCTAAAAAAAAGAA
GGTAAAAGAAGCGCCATCAAAAACACTAAGAAAAGCATCTGAAAACTTAT
TAGAGGATGAAACTAAAAGTATTAAAGGTATTTCTGGTTTATTTATTTTT
AGAGATTTAGGTTTAATTATACTCATTCCTTTTTTATTGTACTTGTTCTT
TAAGTATAACGAGAATATGGATTTGAAGATAGAAGAAGATAAAATCAAAA
AAGATAAAGAAGCGTATGCTTTGGCTGTTCAAAATATGAAGGCATCCAAA
GAAAGAATATTAGAAAAAACAAAAGAAATTTACGTATATACAAATGATAC
TGCTAGTTTAAAATTAACGATTGCTGCAAATGCATATTTTTCTGATTTAG
AATTTAATAAGAGGTATACGTATATGTTTAAAAGAAAGACAAAGTATATC
AATAAATTTTTAAACAATAAAAGTTACGGTTACAAAGGAGTTATAGATAA
ATGTAGAAAAAAATTCTCTCAATTGTGGTTACACGATTCTGTTATTCCTA
ATGGATATGCTAAAAAATTTAGAATTGTAAGATATTATAGAATGAATGCT
AAAGAAAGAGCGTATAATATTGAGCGAGATAAAAAAAGAGCTTACTAT
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