Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 413 |
| Cds size | 390 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815589.8653224-UTR-P-canaliculata_contig101677:539..561 | 1622815589.8653224-UTR-P-canaliculata_contig101677:539..561 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig101677 540..561 + |
| 1693494153.7612984-UTR-P-canaliculata_contig101677:539..561 | 1693494153.7612984-UTR-P-canaliculata_contig101677:539..561 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig101677 540..561 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815589.8758767-CDS-P-canaliculata_contig101677:561..951 | 1622815589.8758767-CDS-P-canaliculata_contig101677:561..951 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101677 562..951 + |
| 1693494153.7751513-CDS-P-canaliculata_contig101677:561..951 | 1693494153.7751513-CDS-P-canaliculata_contig101677:561..951 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101677 562..951 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101677.259.1 >prot_P-canaliculata_contig101677.259.1 ID=prot_P-canaliculata_contig101677.259.1|Name=mRNA_P-canaliculata_contig101677.259.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=130bp
MTAVSPRALWLAGGHSRDCTFWDCRGVQIINRQPRCPLVNTGAITTATGV
NHVDSGSFSSRCCTFRRTRTSADPIRIFCIRLATTLTLSRPPRFASCARL
TVCVSPRVLRLVGDFSCDCMFWNDRGGQLT back to topmRNA from alignment at P-canaliculata_contig101677:540..951+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig101677.259.1 ID=mRNA_P-canaliculata_contig101677.259.1|Name=mRNA_P-canaliculata_contig101677.259.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=412bp|location=Sequence derived from alignment at P-canaliculata_contig101677:540..951+ (Pelvetia canaliculata dioecious)
ATTCGTGCCCAGAGCAAAACTCATGACTGCTGTTTCACCTCGGGCCCTAT
GGCTTGCAGGGGGTCATTCACGTGACTGTACGTTTTGGGACTGTAGGGGA
GTACAGATTATTAATAGGCAACCGAGGTGCCCACTGGTGAACACAGGAGC
CATCACAACAGCAACGGGCGTAAATCACGTGGACTCGGGGAGTTTTAGCT
CACGATGTTGTACGTTCCGGCGTACACGCACAAGCGCAGACCCTATTCGG
ATATTTTGTATCCGACTAGCTACAACCTTGACTCTATCCCGGCCCCCACG
ATTTGCGTCCTGCGCAAGACTTACGGTTTGTGTTTCACCCCGGGTCCTAC
GGCTCGTGGGGGATTTTTCGTGTGACTGTATGTTTTGGAACGATAGAGGA
GGACAACTCACT back to topCoding sequence (CDS) from alignment at P-canaliculata_contig101677:540..951+ >mRNA_P-canaliculata_contig101677.259.1 ID=mRNA_P-canaliculata_contig101677.259.1|Name=mRNA_P-canaliculata_contig101677.259.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at P-canaliculata_contig101677:540..951+ (Pelvetia canaliculata dioecious)
ATGACTGCTGTTTCACCTCGGGCCCTATGGCTTGCAGGGGGTCATTCACG
TGACTGTACGTTTTGGGACTGTAGGGGAGTACAGATTATTAATAGGCAAC
CGAGGTGCCCACTGGTGAACACAGGAGCCATCACAACAGCAACGGGCGTA
AATCACGTGGACTCGGGGAGTTTTAGCTCACGATGTTGTACGTTCCGGCG
TACACGCACAAGCGCAGACCCTATTCGGATATTTTGTATCCGACTAGCTA
CAACCTTGACTCTATCCCGGCCCCCACGATTTGCGTCCTGCGCAAGACTT
ACGGTTTGTGTTTCACCCCGGGTCCTACGGCTCGTGGGGGATTTTTCGTG
TGACTGTATGTTTTGGAACGATAGAGGAGGACAACTCACTATGACTGCTG
TTTCACCTCGGGCCCTATGGCTTGCAGGGGGTCATTCACGTGACTGTACG
TTTTGGGACTGTAGGGGAGTACAGATTATTAATAGGCAACCGAGGTGCCC
ACTGGTGAACACAGGAGCCATCACAACAGCAACGGGCGTAAATCACGTGG
ACTCGGGGAGTTTTAGCTCACGATGTTGTACGTTCCGGCGTACACGCACA
AGCGCAGACCCTATTCGGATATTTTGTATCCGACTAGCTACAACCTTGAC
TCTATCCCGGCCCCCACGATTTGCGTCCTGCGCAAGACTTACGGTTTGTG
TTTCACCCCGGGTCCTACGGCTCGTGGGGGATTTTTCGTGTGACTGTATG
TTTTGGAACGATAGAGGAGGACAACTCACT back to top
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