mRNA_P-canaliculata_contig101677.259.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101677.259.1
Unique NamemRNA_P-canaliculata_contig101677.259.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101677.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101677contigP-canaliculata_contig101677:540..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size413
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.8653224-UTR-P-canaliculata_contig101677:539..5611622815589.8653224-UTR-P-canaliculata_contig101677:539..561Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101677 540..561 +
1693494153.7612984-UTR-P-canaliculata_contig101677:539..5611693494153.7612984-UTR-P-canaliculata_contig101677:539..561Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101677 540..561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.8758767-CDS-P-canaliculata_contig101677:561..9511622815589.8758767-CDS-P-canaliculata_contig101677:561..951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101677 562..951 +
1693494153.7751513-CDS-P-canaliculata_contig101677:561..9511693494153.7751513-CDS-P-canaliculata_contig101677:561..951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101677 562..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101677.259.1prot_P-canaliculata_contig101677.259.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101677 562..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101677.259.1

>prot_P-canaliculata_contig101677.259.1 ID=prot_P-canaliculata_contig101677.259.1|Name=mRNA_P-canaliculata_contig101677.259.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=130bp
MTAVSPRALWLAGGHSRDCTFWDCRGVQIINRQPRCPLVNTGAITTATGV
NHVDSGSFSSRCCTFRRTRTSADPIRIFCIRLATTLTLSRPPRFASCARL
TVCVSPRVLRLVGDFSCDCMFWNDRGGQLT
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mRNA from alignment at P-canaliculata_contig101677:540..951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101677.259.1 ID=mRNA_P-canaliculata_contig101677.259.1|Name=mRNA_P-canaliculata_contig101677.259.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=412bp|location=Sequence derived from alignment at P-canaliculata_contig101677:540..951+ (Pelvetia canaliculata dioecious)
ATTCGTGCCCAGAGCAAAACTCATGACTGCTGTTTCACCTCGGGCCCTAT
GGCTTGCAGGGGGTCATTCACGTGACTGTACGTTTTGGGACTGTAGGGGA
GTACAGATTATTAATAGGCAACCGAGGTGCCCACTGGTGAACACAGGAGC
CATCACAACAGCAACGGGCGTAAATCACGTGGACTCGGGGAGTTTTAGCT
CACGATGTTGTACGTTCCGGCGTACACGCACAAGCGCAGACCCTATTCGG
ATATTTTGTATCCGACTAGCTACAACCTTGACTCTATCCCGGCCCCCACG
ATTTGCGTCCTGCGCAAGACTTACGGTTTGTGTTTCACCCCGGGTCCTAC
GGCTCGTGGGGGATTTTTCGTGTGACTGTATGTTTTGGAACGATAGAGGA
GGACAACTCACT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101677:540..951+

>mRNA_P-canaliculata_contig101677.259.1 ID=mRNA_P-canaliculata_contig101677.259.1|Name=mRNA_P-canaliculata_contig101677.259.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at P-canaliculata_contig101677:540..951+ (Pelvetia canaliculata dioecious)
ATGACTGCTGTTTCACCTCGGGCCCTATGGCTTGCAGGGGGTCATTCACG
TGACTGTACGTTTTGGGACTGTAGGGGAGTACAGATTATTAATAGGCAAC
CGAGGTGCCCACTGGTGAACACAGGAGCCATCACAACAGCAACGGGCGTA
AATCACGTGGACTCGGGGAGTTTTAGCTCACGATGTTGTACGTTCCGGCG
TACACGCACAAGCGCAGACCCTATTCGGATATTTTGTATCCGACTAGCTA
CAACCTTGACTCTATCCCGGCCCCCACGATTTGCGTCCTGCGCAAGACTT
ACGGTTTGTGTTTCACCCCGGGTCCTACGGCTCGTGGGGGATTTTTCGTG
TGACTGTATGTTTTGGAACGATAGAGGAGGACAACTCACTATGACTGCTG
TTTCACCTCGGGCCCTATGGCTTGCAGGGGGTCATTCACGTGACTGTACG
TTTTGGGACTGTAGGGGAGTACAGATTATTAATAGGCAACCGAGGTGCCC
ACTGGTGAACACAGGAGCCATCACAACAGCAACGGGCGTAAATCACGTGG
ACTCGGGGAGTTTTAGCTCACGATGTTGTACGTTCCGGCGTACACGCACA
AGCGCAGACCCTATTCGGATATTTTGTATCCGACTAGCTACAACCTTGAC
TCTATCCCGGCCCCCACGATTTGCGTCCTGCGCAAGACTTACGGTTTGTG
TTTCACCCCGGGTCCTACGGCTCGTGGGGGATTTTTCGTGTGACTGTATG
TTTTGGAACGATAGAGGAGGACAACTCACT
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