mRNA_P-canaliculata_contig10165.257.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10165.257.1
Unique NamemRNA_P-canaliculata_contig10165.257.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Match: A0A6H5JSR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.740e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   73 LTVLSVSVDGKIVAWDAVVKSERYHMQHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG 267
            L VLS S++G I AW+ + KSE+Y M+H    EV SMLVLPGG ++ TGT +G+VRFW+LDTG G
Sbjct:   95 LVVLSASLNGVIRAWETLGKSEKYCMRHSGGAEVTSMLVLPGGSVLVTGTDDGSVRFWQLDTGAG 159
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BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Match: D8LC79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC79_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 9.940e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   73 LTVLSVSVDGKIVAWDAVVKSERYHMQHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG 267
            L VLS S++G I AW+ + KSE+Y M+H    EV SMLVLPGG ++ TGT +G+VRFW+LDTG G
Sbjct:  567 LVVLSASMNGVIRAWETLGKSEKYCMRHSGGVEVTSMLVLPGGSVLVTGTDDGSVRFWQLDTGAG 631
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSR9_9PHAE3.740e-1658.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC79_ECTSI9.940e-1658.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10165contigP-canaliculata_contig10165:1980..2426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue5.7e-13
Seed eggNOG ortholog2880.D8LC79
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0032182,GO:0043130,GO:0044424,GO:0044464
EggNOG free text desc.regulation of protein monoubiquitination
EggNOG OGsKOG0308@1,KOG0308@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.7139099-CDS-P-canaliculata_contig10165:1979..21961622815589.7139099-CDS-P-canaliculata_contig10165:1979..2196Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10165 1980..2196 +
1693494153.6531503-CDS-P-canaliculata_contig10165:1979..21961693494153.6531503-CDS-P-canaliculata_contig10165:1979..2196Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10165 1980..2196 +
1622815589.724625-CDS-P-canaliculata_contig10165:2376..24261622815589.724625-CDS-P-canaliculata_contig10165:2376..2426Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10165 2377..2426 +
1693494153.6634934-CDS-P-canaliculata_contig10165:2376..24261693494153.6634934-CDS-P-canaliculata_contig10165:2376..2426Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10165 2377..2426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10165.257.1prot_P-canaliculata_contig10165.257.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10165 1980..2426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10165.257.1

>prot_P-canaliculata_contig10165.257.1 ID=prot_P-canaliculata_contig10165.257.1|Name=mRNA_P-canaliculata_contig10165.257.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=89bp
YQPDEDQLDDGTPNEEEKIEGDLVLTVLSVSVDGKIVAWDAVVKSERYHM
QHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG
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mRNA from alignment at P-canaliculata_contig10165:1980..2426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10165.257.1 ID=mRNA_P-canaliculata_contig10165.257.1|Name=mRNA_P-canaliculata_contig10165.257.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at P-canaliculata_contig10165:1980..2426+ (Pelvetia canaliculata dioecious)
TATCAACCTGACGAAGACCAACTTGACGATGGAACCCCAAACGAGGAAGA
AAAAATAGAGGGCGACCTCGTACTAACAGTTCTGTCTGTTAGCGTTGACG
GGAAAATCGTGGCATGGGATGCCGTGGTGAAAAGTGAAAGATATCATATG
CAGCATCCCCCGGACGAGGAAGTGGCCAGCATGCTCGTGCTCCCGGGAGG
GCAACTCATGGCAACAGGTGTGTTCCAAAGGCATCTATGCGTCCGTCATA
AAACCACCCACGCTGCAATCCGCAGCATCCTCCAAAAGTGATCGTTGACA
GCTGTAGGAGACACAACTTAGCGCTGTTCGGTTTGCTGCGAAACAGATGC
GCTAAAAGGGTCATGAAATCGATGTCTCGTGTGCATTCCTTCTGCAGGTA
CGGGTAACGGGAATGTGAGGTTTTGGCGGCTAGACACTGGAGTAGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10165:1980..2426+

>mRNA_P-canaliculata_contig10165.257.1 ID=mRNA_P-canaliculata_contig10165.257.1|Name=mRNA_P-canaliculata_contig10165.257.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at P-canaliculata_contig10165:1980..2426+ (Pelvetia canaliculata dioecious)
TATCAACCTGACGAAGACCAACTTGACGATGGAACCCCAAACGAGGAAGA
AAAAATAGAGGGCGACCTCGTACTAACAGTTCTGTCTGTTAGCGTTGACG
GGAAAATCGTGGCATGGGATGCCGTGGTGAAAAGTGAAAGATATCATATG
CAGCATCCCCCGGACGAGGAAGTGGCCAGCATGCTCGTGCTCCCGGGAGG
GCAACTCATGGCAACAGTATCAACCTGACGAAGACCAACTTGACGATGGA
ACCCCAAACGAGGAAGAAAAAATAGAGGGCGACCTCGTACTAACAGTTCT
GTCTGTTAGCGTTGACGGGAAAATCGTGGCATGGGATGCCGTGGTGAAAA
GTGAAAGATATCATATGCAGCATCCCCCGGACGAGGAAGTGGCCAGCATG
CTCGTGCTCCCGGGAGGGCAACTCATGGCAACAGGTACGGGTAACGGGAA
TGTGAGGTTTTGGCGGCTAGACACTGGAGTAGGGGTACGGGTAACGGGAA
TGTGAGGTTTTGGCGGCTAGACACTGGAGTAGGG
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