Homology
BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Match:
A0A6H5JSR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR9_9PHAE)
HSP 1 Score: 80.9 bits (198), Expect = 3.740e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 73 LTVLSVSVDGKIVAWDAVVKSERYHMQHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG 267
L VLS S++G I AW+ + KSE+Y M+H EV SMLVLPGG ++ TGT +G+VRFW+LDTG G
Sbjct: 95 LVVLSASLNGVIRAWETLGKSEKYCMRHSGGAEVTSMLVLPGGSVLVTGTDDGSVRFWQLDTGAG 159
BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Match:
D8LC79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC79_ECTSI)
HSP 1 Score: 80.5 bits (197), Expect = 9.940e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 73 LTVLSVSVDGKIVAWDAVVKSERYHMQHPPDEEVASMLVLPGGQLMATGTGNGNVRFWRLDTGVG 267
L VLS S++G I AW+ + KSE+Y M+H EV SMLVLPGG ++ TGT +G+VRFW+LDTG G
Sbjct: 567 LVVLSASMNGVIRAWETLGKSEKYCMRHSGGVEVTSMLVLPGGSVLVTGTDDGSVRFWQLDTGAG 631
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10165.257.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.74e-16 / Id = 58.46 Expect = 9.94e-16 / Id = 58.46 Sequence A0A6H5JSR9_9PHAE D8LC79_ECTSI
Match Name E-value Identity Description
A0A6H5JSR9_9PHAE 3.740e-16 58.46 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LC79_ECTSI 9.940e-16 58.46 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 80.1 Seed ortholog evalue 5.7e-13 Seed eggNOG ortholog 2880.D8LC79 GOs GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0032182,GO:0043130,GO:0044424,GO:0044464 EggNOG free text desc. regulation of protein monoubiquitination EggNOG OGs KOG0308@1,KOG0308@2759 COG Functional cat. T Best tax level Eukaryota Best eggNOG OG NA|NA|NA Hectar predicted targeting category other localisation Exons 2 Model size 269 Cds size 267 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815589.7139099-CDS-P-canaliculata_contig10165:1979..2196 1622815589.7139099-CDS-P-canaliculata_contig10165:1979..2196 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10165 1980..2196 + 1693494153.6531503-CDS-P-canaliculata_contig10165:1979..2196 1693494153.6531503-CDS-P-canaliculata_contig10165:1979..2196 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10165 1980..2196 + 1622815589.724625-CDS-P-canaliculata_contig10165:2376..2426 1622815589.724625-CDS-P-canaliculata_contig10165:2376..2426 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10165 2377..2426 + 1693494153.6634934-CDS-P-canaliculata_contig10165:2376..2426 1693494153.6634934-CDS-P-canaliculata_contig10165:2376..2426 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10165 2377..2426 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10165.257.1
>prot_P-canaliculata_contig10165.257.1 ID=prot_P-canaliculata_contig10165.257.1|Name=mRNA_P-canaliculata_contig10165.257.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=89bp
YQPDEDQLDDGTPNEEEKIEGDLVLTVLSVSVDGKIVAWDAVVKSERYHM back to top mRNA from alignment at P-canaliculata_contig10165:1980..2426+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10165.257.1 ID=mRNA_P-canaliculata_contig10165.257.1|Name=mRNA_P-canaliculata_contig10165.257.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at P-canaliculata_contig10165:1980..2426+ (Pelvetia canaliculata dioecious)TATCAACCTGACGAAGACCAACTTGACGATGGAACCCCAAACGAGGAAGA
AAAAATAGAGGGCGACCTCGTACTAACAGTTCTGTCTGTTAGCGTTGACG
GGAAAATCGTGGCATGGGATGCCGTGGTGAAAAGTGAAAGATATCATATG
CAGCATCCCCCGGACGAGGAAGTGGCCAGCATGCTCGTGCTCCCGGGAGG
GCAACTCATGGCAACAG GTGTGTTCCAAAGGCATCTATGCGTCCGTCATA
AAACCACCCACGCTGCAATCCGCAGCATCCTCCAAAAGTGATCGTTGACA
GCTGTAGGAGACACAACTTAGCGCTGTTCGGTTTGCTGCGAAACAGATGC
GCTAAAAGGGTCATGAAATCGATGTCTCGTGTGCATTCCTTCTGCAGGTA
CGGGTAACGGGAATGTGAGGTTTTGGCGGCTAGACACTGGAGTAGGG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10165:1980..2426+
>mRNA_P-canaliculata_contig10165.257.1 ID=mRNA_P-canaliculata_contig10165.257.1|Name=mRNA_P-canaliculata_contig10165.257.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at P-canaliculata_contig10165:1980..2426+ (Pelvetia canaliculata dioecious) back to top