mRNA_P-canaliculata_contig101640.254.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI00058D053C (hypothetical protein n=1 Tax=Psychroserpens damuponensis TaxID=943936 RepID=UPI00058D053C) HSP 1 Score: 58.2 bits (139), Expect = 6.550e-8 Identity = 66/79 (83.54%), Postives = 74/79 (93.67%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDAVKEGA 237
MKKLILNI +AL+VSV+SCR+TKEGA+NAAD+I NA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG+D+VKEGA
Sbjct: 1 MKKLILNIALALALVVSVTSCRETKEGAENAADAIENAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDSVKEGA 79
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI001F506EE0 (hypothetical protein n=1 Tax=Arcticiflavibacter luteus TaxID=1434066 RepID=UPI001F506EE0) HSP 1 Score: 56.6 bits (135), Expect = 2.510e-7 Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAV 117
MKKLILNI V+AL+VSV+SCR+TKEGA+NAAD++ NA
Sbjct: 1 MKKLILNIALVLALVVSVTSCRETKEGAENAADALENAA 39
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI000478D4D8 (hypothetical protein n=1 Tax=Sediminibacter sp. Hel_I_10 TaxID=1392490 RepID=UPI000478D4D8) HSP 1 Score: 53.9 bits (128), Expect = 7.270e-7 Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
MKK ILN+ +AL+VSVSSCR+TKEGADNAAD++ N+
Sbjct: 1 MKKPILNLALAIALVVSVSSCRETKEGADNAADAVENS 38
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI001E48C850 (hypothetical protein n=1 Tax=Psychroserpens sp. XSD401 TaxID=2855840 RepID=UPI001E48C850) HSP 1 Score: 54.3 bits (129), Expect = 1.360e-6 Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
MKKLILNI V+AL+VSV+SCR+TKEGA++AAD + NA
Sbjct: 1 MKKLILNIALVLALVVSVTSCRETKEGAEDAADKVENA 38
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: A0A5C7B8S8_9FLAO (Uncharacterized protein n=2 Tax=Psychroserpens burtonensis TaxID=49278 RepID=A0A5C7B8S8_9FLAO) HSP 1 Score: 52.8 bits (125), Expect = 2.020e-6 Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
MKKLILNI V+AL+VSV+SCR+TKEGA++A D++ NA
Sbjct: 1 MKKLILNIALVLALVVSVASCRETKEGAEDAPDAVENA 38
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI0006455ED9 (hypothetical protein n=1 Tax=Psychroserpens sp. Hel_I_66 TaxID=1250004 RepID=UPI0006455ED9) HSP 1 Score: 52.8 bits (125), Expect = 2.020e-6 Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGN 111
MKKLILNI +AL+VSV+SCRDTK+GA+NA+D++ N
Sbjct: 1 MKKLILNIALALALVVSVTSCRDTKDGAENASDAVEN 37
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI0019531AD2 (hypothetical protein n=1 Tax=Flavihalobacter algicola TaxID=1719034 RepID=UPI0019531AD2) HSP 1 Score: 52.4 bits (124), Expect = 2.900e-6 Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAV 117
MKK+ILNI V+AL+VSV+SCR+TKEGA+ A D++ NA
Sbjct: 1 MKKIILNIALVLALVVSVTSCRETKEGAEKAGDAVENAA 39
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI001953335C (hypothetical protein n=1 Tax=Flavihalobacter algicola TaxID=1719034 RepID=UPI001953335C) HSP 1 Score: 52.8 bits (125), Expect = 4.830e-6 Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
MKKLILNI V+AL+VSV+SCR+TKEGA+ A D++ NA
Sbjct: 1 MKKLILNIALVLALVVSVTSCRETKEGAEKAGDAVENA 38
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: UPI000AFE1EA4 (hypothetical protein n=1 Tax=Psychroserpens mesophilus TaxID=325473 RepID=UPI000AFE1EA4) HSP 1 Score: 50.8 bits (120), Expect = 3.110e-5 Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNA 114
MKKL+LNIV V+AL+VSVS CR+TKEGA++AAD++ NA
Sbjct: 1 MKKLLLNIVLVLALIVSVS-CRETKEGAESAADAVENA 37
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Match: A0A5C6ZN41_9FLAO (Uncharacterized protein n=2 Tax=Subsaximicrobium wynnwilliamsii TaxID=291179 RepID=A0A5C6ZN41_9FLAO) HSP 1 Score: 48.5 bits (114), Expect = 9.000e-5 Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 Query: 1 MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGN 111
MKKL+LN +ALLVSVSSCR+T+E DNAAD++ N
Sbjct: 2 MKKLVLNSALALALLVSVSSCRETEESNDNAADAVEN 38 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101640.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101640.254.1 >prot_P-canaliculata_contig101640.254.1 ID=prot_P-canaliculata_contig101640.254.1|Name=mRNA_P-canaliculata_contig101640.254.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=147bp MKKLILNIVFVVALLVSVSSCRDTKEGADNAADSIGNAVDNAGDAIGDAAback to top mRNA from alignment at P-canaliculata_contig101640:445..885- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101640.254.1 ID=mRNA_P-canaliculata_contig101640.254.1|Name=mRNA_P-canaliculata_contig101640.254.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at P-canaliculata_contig101640:445..885- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101640:445..885- >mRNA_P-canaliculata_contig101640.254.1 ID=mRNA_P-canaliculata_contig101640.254.1|Name=mRNA_P-canaliculata_contig101640.254.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at P-canaliculata_contig101640:445..885- (Pelvetia canaliculata dioecious)back to top |